RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 PIN4Q9Y237 131 aaKnown RBP9.66□□□□□ -0.86
CLSTN3-212ENST00000541770 IRAK3Q9Y616 596 aa9.66□□□□□ -0.86
CLSTN3-212ENST00000541770 CLIC4Q9Y696 253 aa9.66□□□□□ -0.86
CLSTN3-212ENST00000541770 TDRD15B5MCY1 1934 aaKnown RBP9.66□□□□□ -0.86
CLSTN3-212ENST00000541770 FAM186AA6NE01 2351 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CACNA1HO95180 2353 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SPTBN4Q9H254 2564 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 A0A087WZ62 844 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CCDC195A0A1B0GUA6 201 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CARNS1A5YM72 827 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 POTEMA6NI47 508 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 INPPL1O15357 1258 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 KRT37O76014 449 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SLITRK3O94933 977 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 LYPLA2O95372 231 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SKIP12755 728 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SFPQP23246 707 aaKnown RBP eCLIP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 RPA1P27694 616 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 DRP2Q13474 957 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SLC39A14Q15043 492 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 IL17AQ16552 155 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 UGCGQ16739 394 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 XKR3Q5GH77 459 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 FOXD4L5Q5VV16 416 aaPredicted RBP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 HAUS3Q68CZ6 603 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CATSPER4Q7RTX7 472 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 ZNF280BQ86YH2 543 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 RHPN2Q8IUC4 686 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 ZNF710Q8N1W2 664 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 LINC01465Q8N7H1 131 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 LINC00301Q8NCQ3 95 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 ERMNQ8TAM6 284 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 GPR152Q8TDT2 470 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 FOXD4L4Q8WXT5 416 aaPredicted RBP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 STAMQ92783 540 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 DYDC2Q96IM9 177 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 AK8Q96MA6 479 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SH2D3AQ9BRG2 576 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 FDXACB1Q9BRP7 624 aaPredicted RBP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 LXNQ9BS40 222 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 POLR3CQ9BUI4 534 aaPredicted RBP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 VN1R3Q9BXE9 311 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 ZSWIM4Q9H7M6 989 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 PIDD1Q9HB75 910 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 TUFT1Q9NNX1 390 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CHST12Q9NRB3 414 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 LRWD1Q9UFC0 647 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 CFAP45Q9UL16 551 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 FAN1Q9Y2M0 1017 aa9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 SRPRBQ9Y5M8 271 aaKnown RBP9.65□□□□□ -0.86
CLSTN3-212ENST00000541770 FANCMQ8IYD8 2048 aa9.65□□□□□ -0.87
CLSTN3-212ENST00000541770 MYH15Q9Y2K3 1946 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 MTCL1Q9Y4B5 1905 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 CLUHO75153 1309 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SLC26A4O43511 780 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 N4BP1O75113 896 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 PPP6R2O75170 966 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 OFD1O75665 1012 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 STBD1O95210 358 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 POMCP01189 267 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 ALDH2P05091 517 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 URODP06132 367 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SP9P0CG40 484 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SPATA31C1P0DKV0 1188 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SRFP11831 508 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 XRCC6P12956 609 aaKnown RBP eCLIP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 LONP1P36776 959 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 DNM2P50570 870 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 RSPO4Q2I0M5 234 aaPredicted RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 ELMSAN1Q6PJG2 1045 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 C15orf39Q6ZRI6 1047 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 GET4Q7L5D6 327 aaPredicted RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SLC44A3Q8N4M1 653 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 KCTD17Q8N5Z5 321 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SMG7Q92540 1137 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 RUBCNQ92622 972 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 PGBD4Q96DM1 585 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 NLRP4Q96MN2 994 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 CNTNAP3BQ96NU0 1288 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 IPO9Q96P70 1041 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 MYADMQ96S97 322 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 NIFKQ9BYG3 293 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 CNTNAP3Q9BZ76 1288 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 RGL1Q9NZL6 768 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 NCDNQ9UBB6 729 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 SIT1Q9Y3P8 196 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 PPME1Q9Y570 386 aa9.64□□□□□ -0.87
CLSTN3-212ENST00000541770 TMEM150BA6NC51 233 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 VWA3AA6NCI4 1184 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 SPTLC2O15270 562 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 B4GALT3O60512 393 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 KINO60870 393 aaKnown RBP9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 MED24O75448 989 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 RFPL2O75678 378 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 DDHD2O94830 711 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 GLUD1P00367 558 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 ADH1AP07327 375 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 SPATA31D3P0C874 917 aa9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 MARCKSP29966 332 aaPredicted RBP9.63□□□□□ -0.87
CLSTN3-212ENST00000541770 RAB27AP51159 221 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms