RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 TMEM132AQ24JP5 1023 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 CABP7Q86V35 215 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 DAW1Q8N136 415 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 SYT2Q8N9I0 419 aaPredicted RBP12.74□□□□□ -0.37
RTN3-209ENST00000538995 CASP10Q92851 521 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 ZFP42Q96MM3 310 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 PNMA5Q96PV4 448 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 RPS6KC1Q96S38 1066 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 KIFC3Q9BVG8 833 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 APOL6Q9BWW8 343 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 C1QTNF1Q9BXJ1 281 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 TMEM134Q9H6X4 195 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 ARHGAP28Q9P2N2 729 aa12.74□□□□□ -0.37
RTN3-209ENST00000538995 RBM19Q9Y4C8 960 aaKnown RBP12.74□□□□□ -0.37
RTN3-209ENST00000538995 K7ERI5 159 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 NRP1O14786 923 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 CXCL14O95715 111 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SOD2P04179 222 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SYT1P21579 422 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 AKAP5P24588 427 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SSTR3P32745 418 aaPredicted RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 UBA7P41226 1012 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SLC12A3P55017 1021 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 PEX3P56589 373 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SF3A1Q15459 793 aaKnown RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 PTPN14Q15678 1187 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 ZRSR1Q15695 479 aaKnown RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 TPRNQ4KMQ1 711 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 ATF7IP2Q5U623 682 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 ANKRD54Q6NXT1 300 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 CDR2LQ86X02 465 aaPredicted RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 GSTCDQ8NEC7 633 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SPIRE2Q8WWL2 714 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SUSD6Q92537 303 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SNX21Q969T3 373 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 CALML4Q96GE6 196 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 HERC2P3Q9BVR0 1158 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 VN1R3Q9BXE9 311 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 CD320Q9NPF0 282 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 DZANK1Q9NVP4 752 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 MARCH5Q9NX47 278 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 PARP2Q9UGN5 583 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 TNFSF13BQ9Y275 285 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 SSX2IPQ9Y2D8 614 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 USP15Q9Y4E8 981 aaPredicted RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 HCFC2Q9Y5Z7 792 aa12.73□□□□□ -0.37
RTN3-209ENST00000538995 MORC2Q9Y6X9 1032 aaPredicted RBP12.73□□□□□ -0.37
RTN3-209ENST00000538995 TTLL13PA6NNM8 815 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 CCDC169A6NNP5 214 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 CLASP2O75122 1294 aaKnown RBP12.72□□□□□ -0.37
RTN3-209ENST00000538995 RECQL4O94761 1208 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 EFEMP2O95967 443 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 EDN1P05305 212 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 PLA2G4BP0C869 781 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 PLS3P13797 630 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 SCP2P22307 547 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 OR1G1P47890 313 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 RESTQ13127 1097 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 NT5DC1Q5TFE4 455 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 PPFIBP1Q86W92 1011 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 GPR65Q8IYL9 337 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 RNF168Q8IYW5 571 aaPredicted RBP12.72□□□□□ -0.37
RTN3-209ENST00000538995 TMEM87AQ8NBN3 555 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 KCNN1Q92952 543 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 NTPCRQ9BSD7 190 aaKnown RBP12.72□□□□□ -0.37
RTN3-209ENST00000538995 COLEC11Q9BWP8 271 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 EMILIN2Q9BXX0 1053 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
RTN3-209ENST00000538995 KMT5AQ9NQR1 393 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 MIOSQ9NXC5 875 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 ODF2LQ9ULJ1 636 aa12.72□□□□□ -0.37
RTN3-209ENST00000538995 PRG3Q9Y2Y8 225 aaPredicted RBP12.72□□□□□ -0.37
RTN3-209ENST00000538995 PI4K2BG5E9Z4 385 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 H0YCG3 227 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 SSBP05455 408 aaKnown RBP eCLIP12.71□□□□□ -0.37
RTN3-209ENST00000538995 URODP06132 367 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 LIG1P18858 919 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 CA8P35219 290 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 SMTNP53814 917 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 RBM10P98175 930 aaKnown RBP12.71□□□□□ -0.37
RTN3-209ENST00000538995 ITIH3Q06033 890 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 TUSC3Q13454 348 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 EEF1DP3Q658K8 133 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 LLGL2Q6P1M3 1020 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 SYCE2Q6PIF2 218 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 ACO2Q99798 780 aaKnown RBP12.71□□□□□ -0.37
RTN3-209ENST00000538995 PHF7Q9BWX1 381 aaPredicted RBP12.71□□□□□ -0.37
RTN3-209ENST00000538995 S1PR5Q9H228 398 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 ZSCAN16Q9H4T2 348 aaPredicted RBP12.71□□□□□ -0.37
RTN3-209ENST00000538995 POLD4Q9HCU8 107 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 MRPL17Q9NRX2 175 aaKnown RBP12.71□□□□□ -0.37
RTN3-209ENST00000538995 SNTG2Q9NY99 539 aa12.71□□□□□ -0.37
RTN3-209ENST00000538995 PTGESO14684 152 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 LILRB3O75022 631 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 BRD1O95696 1058 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 THP07101 528 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 PDIA4P13667 645 aaKnown RBP12.7□□□□□ -0.38
RTN3-209ENST00000538995 ALADP13716 330 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 GLUD2P49448 558 aa12.7□□□□□ -0.38
RTN3-209ENST00000538995 CBX2Q14781 532 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms