RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	CLUL1	Q15846	466 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	VPS72	Q15906	364 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	ADRM1	Q16186	407 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	ATP2B3	Q16720	1220 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	MST1L	Q2TV78	715 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	RABL3	Q5HYI8	236 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	NAIF1	Q69YI7	327 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	EFCAB12	Q6NXP0	572 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	HTR3D	Q70Z44	454 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	SLC16A11	Q8NCK7	471 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	GPR156	Q8NFN8	814 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	SLC25A43	Q8WUT9	341 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	RIN2	Q8WYP3	895 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	DCLRE1C	Q96SD1	692 aa	Known RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	ORAI2	Q96SN7	254 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	REXO4	Q9GZR2	422 aa	Known RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	ENKD1	Q9H0I2	346 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	BCO1	Q9HAY6	547 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	SPON1	Q9HCB6	807 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	LANCL2	Q9NS86	450 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	CCM2L	Q9NUG4	571 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	MOCS1	Q9NZB8	636 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	POGK	Q9P215	609 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	MRFAP1	Q9Y605	127 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	HS3ST3A1	Q9Y663	406 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	XDH	P47989	1333 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	KLRG2	A4D1S0	409 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	ALG1L2	C9J202	215 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296		K7ESF4	209 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	STC2	O76061	302 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SCAF4	O95104	1147 aa	Known RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	HMGB1	P09429	215 aa	Known RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SNRPA1	P09661	255 aa	Known RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	RBP3	P10745	1247 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	IL2RB	P14784	551 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	IBSP	P21815	317 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	FLT3LG	P49771	235 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	RABGGTB	P53611	331 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SLC16A1	P53985	500 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SRSF2	Q01130	221 aa	Known RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	RRP12	Q5JTH9	1297 aa	Known RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	ABHD15	Q6UXT9	468 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	ZNF276	Q8N554	614 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	CNTD1	Q8N815	330 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	OR7D4	Q8NG98	312 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	OR52N2	Q8NGI0	321 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	MDM1	Q8TC05	714 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	CPT1C	Q8TCG5	803 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	TFAP2C	Q92754	450 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	HAS1	Q92839	578 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SENP6	Q9GZR1	1112 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-238	ENST00000534296	MANSC1	Q9H8J5	431 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	TMEM140	Q9NV12	185 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	CEP72	Q9P209	647 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	SORCS3	Q9UPU3	1222 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	GPR45	Q9Y5Y3	372 aa		3.77	□□□□□ -1.81
CD44-238	ENST00000534296	ANKRD62	A6NC57	917 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	PJA2	O43164	708 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	HLA-DOA	P06340	250 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	ADSL	P30566	484 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-238	ENST00000534296	HMGA2	P52926	109 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	TOB2	Q14106	344 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-238	ENST00000534296	NOMO1	Q15155	1222 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	PRAMEF14	Q5SWL7	426 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	DRICH1	Q6PGQ1	229 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-238	ENST00000534296	MIGA2	Q7L4E1	593 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	DDX42	Q86XP3	938 aa	Known RBP eCLIP	3.76	□□□□□ -1.81
CD44-238	ENST00000534296	PLXDC1	Q8IUK5	500 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	DRC7	Q8IY82	874 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	FAM177A1	Q8N128	213 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-238	ENST00000534296	OR10H5	Q8NGA6	315 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	COG1	Q8WTW3	980 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	TSPEAR	Q8WU66	669 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	CYFIP2	Q96F07	1278 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	NDC1	Q9BTX1	674 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	SLC46A2	Q9BY10	475 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	PRDM12	Q9H4Q4	367 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	NRDE2	Q9H7Z3	1164 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	MKS1	Q9NXB0	559 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	DNM3	Q9UQ16	869 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	PHLDB1	Q86UU1	1377 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	SBNO2	Q9Y2G9	1366 aa		3.76	□□□□□ -1.81
CD44-238	ENST00000534296	GAGE12B	A1L429	117 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	GAGE12H	A6NDE8	117 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	TBKBP1	A7MCY6	615 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	RNASET2	O00584	256 aa	Known RBP	3.75	□□□□□ -1.81
CD44-238	ENST00000534296	AKAP8	O43823	692 aa	Known RBP	3.75	□□□□□ -1.81
CD44-238	ENST00000534296	FAM20B	O75063	409 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	RPLP2	P05387	115 aa	Known RBP	3.75	□□□□□ -1.81
CD44-238	ENST00000534296	RAP2A	P10114	183 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	ALAS1	P13196	640 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	OSM	P13725	252 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	LAG3	P18627	525 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	ACVRL1	P37023	503 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	GPR3	P46089	330 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	GUCY2F	P51841	1108 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	CLRN1	P58418	232 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	ERVK-21	P61565	698 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	TGFB2	P61812	414 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	DGCR2	P98153	550 aa		3.75	□□□□□ -1.81

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