RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 METTL13Q8N6R0 699 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 HDAC7Q8WUI4 952 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 FGF13Q92913 245 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 CUL5Q93034 780 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 LPPQ93052 612 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 PLEKHA4Q9H4M7 779 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 HEBP1Q9NRV9 189 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 HELLSQ9NRZ9 838 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 DACT1Q9NYF0 836 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 DDX19BQ9UMR2 479 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 SSX2IPQ9Y2D8 614 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 UBIAD1Q9Y5Z9 338 aa7.34□□□□□ -1.23
CD44-237ENST00000534082 A0A0D9SFI3 127 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 PALM3A6NDB9 673 aaPredicted RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 EIF4E1BA6NMX2 242 aaKnown RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 B4E1Z4 1266 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 PIK3CDO00329 1044 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 MEIS2O14770 477 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 BACH1O14867 736 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 AXIN1O15169 862 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 TGM5O43548 720 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 CYTH3O43739 400 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 EPN2O95208 641 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 PHKA2P46019 1235 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 CXCL12P48061 93 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 GLUD2P49448 558 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 NLRP11P59045 1033 aaKnown RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 NTHL1P78549 312 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 IFIT1BQ5T764 474 aaKnown RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 FAM160B1Q5W0V3 765 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 HEATR6Q6AI08 1181 aaKnown RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 KIAA1211LQ6NV74 962 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 C19orf48Q6RUI8 117 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 GRASPQ7Z6J2 395 aaPredicted RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 ZNF589Q86UQ0 364 aaPredicted RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 LONP2Q86WA8 852 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 PALB2Q86YC2 1186 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 ZNF280BQ86YH2 543 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 ADAM32Q8TC27 787 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 ZNF668Q96K58 619 aaPredicted RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 FAM227BQ96M60 508 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 SCLT1Q96NL6 688 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 BBC3Q96PG8 261 aaPredicted RBP7.33□□□□□ -1.24
CD44-237ENST00000534082 MAP7D2Q96T17 732 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 SDF4Q9BRK5 362 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 ADAMTS10Q9H324 1103 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 SMOC1Q9H4F8 434 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 RIOX1Q9H6W3 641 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 RXFP1Q9HBX9 757 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 JADE2Q9NQC1 790 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 AKT3Q9Y243 479 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 GPSM3Q9Y4H4 160 aa7.33□□□□□ -1.24
CD44-237ENST00000534082 NFASCO94856 1347 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 IGKV6D-21A0A0A0MT36 114 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 MEIS3P2A8K0S8 358 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 K7ESF4 209 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 MAN2B1O00754 1011 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 ZNF213O14771 459 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 NRP1O14786 923 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 MAFGO15525 162 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 GAS2O43903 313 aaKnown RBP7.32□□□□□ -1.24
CD44-237ENST00000534082 DARSP14868 501 aaKnown RBP7.32□□□□□ -1.24
CD44-237ENST00000534082 MMP16P51512 607 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 COL28A1Q2UY09 1125 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 SH3PXD2AQ5TCZ1 1133 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 TCEAL6Q6IPX3 200 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 PDXDC2PQ6P474 469 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 TAS1R1Q7RTX1 841 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 PROSER1Q86XN7 944 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 CCDC60Q8IWA6 550 aaPredicted RBP7.32□□□□□ -1.24
CD44-237ENST00000534082 NPAS3Q8IXF0 933 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 CYP4X1Q8N118 509 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 ITFG1Q8TB96 612 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 URGCPQ8TCY9 931 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 OTUD7AQ8TE49 926 aaPredicted RBP7.32□□□□□ -1.24
CD44-237ENST00000534082 PIBF1Q8WXW3 757 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 DNASE1L2Q92874 299 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 TCEAL3Q969E4 200 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 LOXL4Q96JB6 756 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 TMEM175Q9BSA9 504 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 UBAC1Q9BSL1 405 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 EDEM2Q9BV94 578 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 LMAN1LQ9HAT1 526 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 KCNH7Q9NS40 1196 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 MARCH5Q9NX47 278 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 ZSWIM5Q9P217 1185 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 FAN1Q9Y2M0 1017 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 PRG3Q9Y2Y8 225 aaPredicted RBP7.32□□□□□ -1.24
CD44-237ENST00000534082 NEUROG3Q9Y4Z2 214 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 ADAMTS20P59510 1910 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 F5P12259 2224 aa7.32□□□□□ -1.24
CD44-237ENST00000534082 TENM4Q6N022 2769 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 HYAL3O43820 417 aaPredicted RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 ECI2O75521 394 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 OFD1O75665 1012 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 DXOO77932 396 aaKnown RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 DDHD2O94830 711 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 PAPSS2O95340 614 aaPredicted RBP7.31□□□□□ -1.24
CD44-237ENST00000534082 ATG7O95352 703 aa7.31□□□□□ -1.24
CD44-237ENST00000534082 CCNE2O96020 404 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms