RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NPHP3Q7Z494 1330 aa5.43□□□□□ -1.54
CD44-235ENST00000532339 USP32Q8NFA0 1604 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 PTPN23Q9H3S7 1636 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 DAPK3O43293 454 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 C1SP09871 688 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 MCM7P33993 719 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 DGCR2P98153 550 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 ADCY2Q08462 1091 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 MYBPC3Q14896 1274 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 TCEA2Q15560 299 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 GAGE13Q4V321 117 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 HOMER1Q86YM7 354 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 C7orf31Q8N865 590 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 CACTINQ8WUQ7 758 aaKnown RBP5.42□□□□□ -1.54
CD44-235ENST00000532339 RPL10LQ96L21 214 aaKnown RBP5.42□□□□□ -1.54
CD44-235ENST00000532339 ZNF703Q9H7S9 590 aaPredicted RBP5.42□□□□□ -1.54
CD44-235ENST00000532339 SH3BP1Q9Y3L3 701 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 ADGRL2O95490 1459 aa5.42□□□□□ -1.54
CD44-235ENST00000532339 PXDNQ92626 1479 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 NARSO43776 548 aaKnown RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 GAS7O60861 476 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 VSIG10L2P0DP72 767 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 CANXP27824 592 aaKnown RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 FSTL1Q12841 308 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 CRHR2Q13324 411 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 TUBA3CQ13748 450 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 FHL2Q14192 279 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 ACAP1Q15027 740 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 CREB3L3Q68CJ9 461 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 SPTY2D1Q68D10 685 aaPredicted RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 ESRP1Q6NXG1 681 aaKnown RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 TUBA3EQ6PEY2 450 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 GAREM2Q75VX8 874 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 CLEC14AQ86T13 490 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 KIF18BQ86Y91 864 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 TMPRSS6Q8IU80 811 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 PLA2G15Q8NCC3 412 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 GPHA2Q96T91 129 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 PITHD1Q9GZP4 211 aaPredicted RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 HAPLN2Q9GZV7 340 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 TOMM22Q9NS69 142 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 IFT57Q9NWB7 429 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 PARPBPQ9NWS1 579 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 OXSMQ9NWU1 459 aa5.41□□□□□ -1.54
CD44-235ENST00000532339 ING1Q9UK53 422 aaPredicted RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 TMA7Q9Y2S6 64 aaKnown RBP5.41□□□□□ -1.54
CD44-235ENST00000532339 CFAP65Q6ZU64 1925 aaKnown RBP5.4□□□□□ -1.54
CD44-235ENST00000532339 THSD7AQ9UPZ6 1657 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 PTPRUQ92729 1446 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 TLDC2A0PJX2 215 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 JUNP05412 331 aaKnown RBP5.4□□□□□ -1.54
CD44-235ENST00000532339 TGFB2P61812 414 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 ADAM8P78325 824 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 KRT40Q6A162 431 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 KIAA1841Q6NSI8 718 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 FAM111BQ6SJ93 734 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 KANSL1Q7Z3B3 1105 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 JAZF1Q86VZ6 243 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 PASD1Q8IV76 773 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 MIEF2Q96C03 454 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 TCF25Q9BQ70 676 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 SLITRK6Q9H5Y7 841 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 C14orf93Q9H972 538 aaKnown RBP5.4□□□□□ -1.54
CD44-235ENST00000532339 IL23AQ9NPF7 189 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 STK32BQ9NY57 414 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 DNAI1Q9UI46 699 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 RCAN3Q9UKA8 241 aa5.4□□□□□ -1.54
CD44-235ENST00000532339 PLCH1Q4KWH8 1693 aa5.4□□□□□ -1.55
CD44-235ENST00000532339 RIMS2Q9UQ26 1411 aa5.4□□□□□ -1.55
CD44-235ENST00000532339 A0A0A6YYJ9 748 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 UBE2QL1A1L167 161 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 TOX4O94842 621 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 PRPF6O94906 941 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 APOL3O95236 402 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 F2P00734 622 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 ATP2A2P16615 1042 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 CD40P25942 277 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 NEK4P51957 841 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 RRP1BQ14684 758 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 MAN2A1Q16706 1144 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 IGFL4Q6B9Z1 124 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 GSPT2Q8IYD1 628 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 AMER2Q8N7J2 671 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 EFHBQ8N7U6 833 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.39□□□□□ -1.55
CD44-235ENST00000532339 RNPC3Q96LT9 517 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 PUS7Q96PZ0 661 aaKnown RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 MYL10Q9BUA6 226 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 MTG2Q9H4K7 406 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 SLC52A1Q9NWF4 448 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 CEP72Q9P209 647 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 HECAQ9UBI9 543 aaPredicted RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 CD2APQ9Y5K6 639 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 SPATA31A5Q5VU36 1347 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 SPATA31A7Q8IWB4 1347 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 RGPD3A6NKT7 1758 aaPredicted RBP5.39□□□□□ -1.55
CD44-235ENST00000532339 RGPD4Q7Z3J3 1758 aa5.39□□□□□ -1.55
CD44-235ENST00000532339 CEP152O94986 1710 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 KPNA6O60684 536 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms