RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 LRRC36Q1X8D7 754 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 CLNKQ7Z7G1 428 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 ZBTB38Q8NAP3 1195 aaPredicted RBP15.09■□□□□ 0.01
PCF11-204ENST00000530660 ALG3Q92685 438 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 GPKOWQ92917 476 aaPredicted RBP eCLIP15.09■□□□□ 0.01
PCF11-204ENST00000530660 SMC6Q96SB8 1091 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 POP1Q99575 1024 aaKnown RBP15.09■□□□□ 0.01
PCF11-204ENST00000530660 ARL8BQ9NVJ2 186 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 CCDC160A6NGH7 325 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 TRAF5O00463 557 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 ZNF862O60290 1169 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 FGFR1OPO95684 399 aaKnown RBP15.09■□□□□ 0.01
PCF11-204ENST00000530660 EPS15P42566 896 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 KCNJ1P48048 391 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 IL9RQ01113 521 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 TROAPQ12815 778 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 DHX34Q14147 1143 aaKnown RBP15.09■□□□□ 0.01
PCF11-204ENST00000530660 CTC1Q2NKJ3 1217 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 SLC4A8Q2Y0W8 1093 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 NLRP9Q7RTR0 991 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 ZDHHC14Q8IZN3 488 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 VPS52Q8N1B4 723 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 BTBD10Q9BSF8 475 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 DCTN4Q9UJW0 460 aa15.09■□□□□ 0.01
PCF11-204ENST00000530660 CNTNAP5Q8WYK1 1306 aa15.08■□□□□ 0.01
PCF11-204ENST00000530660 TMEM247A6NEH6 219 aa15.08■□□□□ 0
PCF11-204ENST00000530660 ADAMTS2O95450 1211 aa15.08■□□□□ 0
PCF11-204ENST00000530660 BAG2O95816 211 aa15.08■□□□□ 0
PCF11-204ENST00000530660 EMP3P54852 163 aa15.08■□□□□ 0
PCF11-204ENST00000530660 GSTM4Q03013 218 aa15.08■□□□□ 0
PCF11-204ENST00000530660 KYNUQ16719 465 aa15.08■□□□□ 0
PCF11-204ENST00000530660 TMTC3Q6ZXV5 915 aa15.08■□□□□ 0
PCF11-204ENST00000530660 ABHD8Q96I13 439 aa15.08■□□□□ 0
PCF11-204ENST00000530660 TTC1Q99614 292 aa15.08■□□□□ 0
PCF11-204ENST00000530660 EFR3BQ9Y2G0 817 aa15.08■□□□□ 0
PCF11-204ENST00000530660 H2AFZP0C0S5 128 aa15.08■□□□□ 0
PCF11-204ENST00000530660 CD97P48960 835 aa15.08■□□□□ 0
PCF11-204ENST00000530660 GPSM2P81274 684 aa15.08■□□□□ 0
PCF11-204ENST00000530660 CDC16Q13042 620 aa15.08■□□□□ 0
PCF11-204ENST00000530660 UBE4AQ14139 1066 aa15.08■□□□□ 0
PCF11-204ENST00000530660 LLGL1Q15334 1064 aa15.08■□□□□ 0
PCF11-204ENST00000530660 CHRNA2Q15822 529 aa15.08■□□□□ 0
PCF11-204ENST00000530660 LRRC8BQ6P9F7 803 aa15.08■□□□□ 0
PCF11-204ENST00000530660 H2AFVQ71UI9 128 aa15.08■□□□□ 0
PCF11-204ENST00000530660 CCDC80Q76M96 950 aa15.08■□□□□ 0
PCF11-204ENST00000530660 PHLDB2Q86SQ0 1253 aa15.08■□□□□ 0
PCF11-204ENST00000530660 PLA2G12BQ9BX93 195 aa15.08■□□□□ 0
PCF11-204ENST00000530660 TUT1Q9H6E5 874 aaKnown RBP15.08■□□□□ 0
PCF11-204ENST00000530660 BTBD7Q9P203 1132 aa15.08■□□□□ 0
PCF11-204ENST00000530660 PCDHA3Q9Y5H8 950 aa15.08■□□□□ 0
PCF11-204ENST00000530660 CCDC22O60826 627 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SCG2P13521 617 aa15.07■□□□□ 0
PCF11-204ENST00000530660 ZFXP17010 805 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 PPP2R5BQ15173 497 aa15.07■□□□□ 0
PCF11-204ENST00000530660 PLEKHG4Q58EX7 1191 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TRIM50Q86XT4 487 aa15.07■□□□□ 0
PCF11-204ENST00000530660 PRELID2Q8N945 189 aa15.07■□□□□ 0
PCF11-204ENST00000530660 U2AF1L4Q8WU68 220 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 PRR11Q96HE9 360 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 NPHS2Q9NP85 383 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TCP11L1Q9NUJ3 509 aa15.07■□□□□ 0
PCF11-204ENST00000530660 GRID1Q9ULK0 1009 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TTC7AQ9ULT0 858 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 R3HDM2Q9Y2K5 976 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 HEY1Q9Y5J3 304 aa15.07■□□□□ 0
PCF11-204ENST00000530660 COL4A3BPQ9Y5P4 624 aa15.07■□□□□ 0
PCF11-204ENST00000530660 CCDC88AQ3V6T2 1871 aa15.07■□□□□ 0
PCF11-204ENST00000530660 MYMKA6NI61 221 aa15.07■□□□□ 0
PCF11-204ENST00000530660 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 STK10O94804 968 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 ABCB4P21439 1286 aa15.07■□□□□ 0
PCF11-204ENST00000530660 CTTNQ14247 550 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 EPM2AIP1Q7L775 607 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 KRT28Q7Z3Y7 464 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TREML1Q86YW5 311 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SYCE1Q8N0S2 351 aa15.07■□□□□ 0
PCF11-204ENST00000530660 GAB3Q8WWW8 586 aa15.07■□□□□ 0
PCF11-204ENST00000530660 GANQ9H2C0 597 aa15.07■□□□□ 0
PCF11-204ENST00000530660 AAASQ9NRG9 546 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 VILLO15195 856 aa15.07■□□□□ 0
PCF11-204ENST00000530660 NMT2O60551 498 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SLC9A1P19634 815 aa15.07■□□□□ 0
PCF11-204ENST00000530660 ATP5DP30049 168 aa15.07■□□□□ 0
PCF11-204ENST00000530660 CHKAP35790 457 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SH3BGRP55822 239 aaPredicted RBP15.07■□□□□ 0
PCF11-204ENST00000530660 TMEM259Q4ZIN3 620 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TMEM63BQ5T3F8 832 aa15.07■□□□□ 0
PCF11-204ENST00000530660 TMEM53Q6P2H8 277 aa15.07■□□□□ 0
PCF11-204ENST00000530660 RBM44Q6ZP01 1051 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 ADGRA1Q86SQ6 560 aa15.07■□□□□ 0
PCF11-204ENST00000530660 PWWP2AQ96N64 755 aa15.07■□□□□ 0
PCF11-204ENST00000530660 RUNDC3BQ96NL0 473 aa15.07■□□□□ 0
PCF11-204ENST00000530660 SRPK1Q96SB4 655 aaKnown RBP15.07■□□□□ 0
PCF11-204ENST00000530660 CCDC28BQ9BUN5 200 aa15.07■□□□□ 0
PCF11-204ENST00000530660 IL1RAPL1Q9NZN1 696 aa15.07■□□□□ 0
PCF11-204ENST00000530660 NAALADL1Q9UQQ1 740 aa15.07■□□□□ 0
PCF11-204ENST00000530660 PPP1R2P41236 205 aa15.06■□□□□ 0
PCF11-204ENST00000530660 EAPPQ56P03 285 aaPredicted RBP15.06■□□□□ 0
PCF11-204ENST00000530660 KLHL35Q6PF15 583 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms