RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NR5A1Q13285 461 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 TFDP1Q14186 410 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 SIX5Q8N196 739 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 GSTCDQ8NEC7 633 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 RSAD2Q8WXG1 361 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 TNFRSF25Q93038 417 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 ZNF707Q96C28 371 aaPredicted RBP26.22■■□□□ 1.79
CPSF1-202ENST00000527827 HSD17B14Q9BPX1 270 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 NXF3Q9H4D5 531 aaKnown RBP26.22■■□□□ 1.79
CPSF1-202ENST00000527827 FBXL21Q9UKT6 434 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 GIT1Q9Y2X7 761 aa26.22■■□□□ 1.79
CPSF1-202ENST00000527827 CLUHO75153 1309 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 PAPLNO95428 1278 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 ARL2P36404 184 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 CCDC105Q8IYK2 499 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 B3GALT6Q96L58 329 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 MYADMQ96S97 322 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 ANKEF1Q9NU02 776 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 DPP7Q9UHL4 492 aa26.21■■□□□ 1.79
CPSF1-202ENST00000527827 B4GALT5O43286 388 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 SPATA31D3P0C874 917 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 GLRA2P23416 452 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 GBP2P32456 591 aaPredicted RBP26.2■■□□□ 1.78
CPSF1-202ENST00000527827 NCBP1Q09161 790 aaKnown RBP26.2■■□□□ 1.78
CPSF1-202ENST00000527827 ELMSAN1Q6PJG2 1045 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 SPATA31D4Q6ZUB0 917 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 HDAC7Q8WUI4 952 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 SMG7Q92540 1137 aaKnown RBP26.2■■□□□ 1.78
CPSF1-202ENST00000527827 RTP3Q9BQQ7 232 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 COLEC11Q9BWP8 271 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 GPR62Q9BZJ7 368 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 EPS15L1Q9UBC2 864 aa26.2■■□□□ 1.78
CPSF1-202ENST00000527827 ORC3Q9UBD5 711 aaPredicted RBP26.2■■□□□ 1.78
CPSF1-202ENST00000527827 DGAT1O75907 488 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 FDPSP14324 419 aaKnown RBP26.19■■□□□ 1.78
CPSF1-202ENST00000527827 AKAP5P24588 427 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 FUT10Q6P4F1 479 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 CDR2LQ86X02 465 aaPredicted RBP26.19■■□□□ 1.78
CPSF1-202ENST00000527827 PALB2Q86YC2 1186 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 STAMQ92783 540 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 NFKBIZQ9BYH8 718 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 TRIM6Q9C030 488 aaPredicted RBP26.19■■□□□ 1.78
CPSF1-202ENST00000527827 PCDHA12Q9UN75 941 aa26.19■■□□□ 1.78
CPSF1-202ENST00000527827 NR1I2O75469 434 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 C1RP00736 705 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 CFHP08603 1231 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 KRT2P35908 639 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 RARRES1P49788 294 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 HACE1Q8IYU2 909 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 DTWD2Q8NBA8 298 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 NKD2Q969F2 451 aaPredicted RBP26.18■■□□□ 1.78
CPSF1-202ENST00000527827 WNT16Q9UBV4 365 aa26.18■■□□□ 1.78
CPSF1-202ENST00000527827 DOCK6Q96HP0 2047 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 A0A087WWV3 80 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 KRBA1A5PL33 1030 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 WNT7AO00755 349 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 TGM5O43548 720 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 NPTXRO95502 500 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 ANGPT1Q15389 498 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 CALCRLQ16602 461 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 LILRA6Q6PI73 481 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 POTEGQ6S5H5 508 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 GPR65Q8IYL9 337 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 SLC44A3Q8N4M1 653 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 WASF1Q92558 559 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 RABGGTAQ92696 567 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 NT5C3AQ9H0P0 336 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 PLEKHA4Q9H4M7 779 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 TTC12Q9H892 705 aaPredicted RBP26.17■■□□□ 1.78
CPSF1-202ENST00000527827 FNIP2Q9P278 1114 aa26.17■■□□□ 1.78
CPSF1-202ENST00000527827 A0A1B0GUA9 196 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 GRIK3Q13003 919 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 USP41Q3LFD5 358 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 SLC27A1Q6PCB7 646 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 GLYCTKQ8IVS8 523 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 PIGOQ8TEQ8 1089 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 POLR3FQ9H1D9 316 aaPredicted RBP26.16■■□□□ 1.78
CPSF1-202ENST00000527827 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP26.16■■□□□ 1.78
CPSF1-202ENST00000527827 ZDHHC7Q9NXF8 308 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 KLK14Q9P0G3 267 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 ADAM28Q9UKQ2 775 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 GVINP1Q7Z2Y8 2422 aa26.16■■□□□ 1.78
CPSF1-202ENST00000527827 RIN2Q8WYP3 895 aaPredicted RBP26.15■■□□□ 1.78
CPSF1-202ENST00000527827 CACNG4Q9UBN1 327 aa26.15■■□□□ 1.78
CPSF1-202ENST00000527827 PARP2Q9UGN5 583 aa26.15■■□□□ 1.78
CPSF1-202ENST00000527827 ZMYM2Q9UBW7 1377 aa26.15■■□□□ 1.78
CPSF1-202ENST00000527827 RPL17P18621 184 aaKnown RBP26.14■■□□□ 1.78
CPSF1-202ENST00000527827 NXPE3Q969Y0 559 aa26.14■■□□□ 1.78
CPSF1-202ENST00000527827 CCDC43Q96MW1 224 aaKnown RBP26.14■■□□□ 1.78
CPSF1-202ENST00000527827 PRKD2Q9BZL6 878 aa26.14■■□□□ 1.78
CPSF1-202ENST00000527827 PIDD1Q9HB75 910 aa26.14■■□□□ 1.78
CPSF1-202ENST00000527827 BRMS1Q9HCU9 246 aa26.14■■□□□ 1.78
CPSF1-202ENST00000527827 USO1O60763 962 aaKnown RBP26.13■■□□□ 1.77
CPSF1-202ENST00000527827 SRFP11831 508 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 LAMP2P13473 410 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 TXKP42681 527 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 NECAB1Q8N987 351 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 MTMR9Q96QG7 549 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 PAAF1Q9BRP4 392 aa26.13■■□□□ 1.77
CPSF1-202ENST00000527827 GPRC5CQ9NQ84 441 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms