RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 PPP1R35Q8TAP8 253 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 FNIP1Q8TF40 1166 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 SNX33Q8WV41 574 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 DPF2Q92785 391 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 GFM2Q969S9 779 aaKnown RBP5.81□□□□□ -1.48
CD44-220ENST00000525688 SIGLEC10Q96LC7 697 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 KATNBL1Q9H079 304 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 KMT5AQ9NQR1 393 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 USP25Q9UHP3 1055 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 DNAI1Q9UI46 699 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 PMF1-BGLAPU3KQ54 211 aa5.81□□□□□ -1.48
CD44-220ENST00000525688 ARAP1Q96P48 1450 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 APAF1O14727 1248 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 SLC16A6O15403 523 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 ENDOD1O94919 500 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 LDHAP00338 332 aaKnown RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 NBPF7P0C2Y1 421 aaPredicted RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 GLDCP23378 1020 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 DLX2Q07687 328 aaPredicted RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 IL10RAQ13651 578 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 SEPT2Q15019 361 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 NOMO1Q15155 1222 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 UBE3CQ15386 1083 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 VPS72Q15906 364 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 ZNF827Q17R98 1081 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 MST1LQ2TV78 715 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 THEMIS2Q5TEJ8 643 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 TTC7BQ86TV6 843 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 FAM129CQ86XR2 697 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 REXO1L1PQ8IX06 675 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 IFNL2Q8IZJ0 200 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 PIK3C3Q8NEB9 887 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 KCNN1Q92952 543 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 NAP1L4Q99733 375 aaKnown RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 C7orf25Q9BPX7 421 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 LRFN3Q9BTN0 628 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 EPB41L4AQ9HCS5 686 aaPredicted RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.8□□□□□ -1.48
CD44-220ENST00000525688 CDC42EP3Q9UKI2 254 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 L1RE1Q9UN81 338 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 SHROOM2Q13796 1616 aa5.8□□□□□ -1.48
CD44-220ENST00000525688 KIAA0586Q9BVV6 1533 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 CFAP69A5D8W1 941 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 IFRD1O00458 451 aaPredicted RBP5.79□□□□□ -1.48
CD44-220ENST00000525688 DAPK3O43293 454 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 AKR1B10O60218 316 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 ZNF500O60304 480 aaPredicted RBP5.79□□□□□ -1.48
CD44-220ENST00000525688 HMGCRP04035 888 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 HSP90AA1P07900 732 aaKnown RBP5.79□□□□□ -1.48
CD44-220ENST00000525688 MED14OSP0DP75 135 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 HNRNPLP14866 589 aaKnown RBP eCLIP5.79□□□□□ -1.48
CD44-220ENST00000525688 KCNQ1P51787 676 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 WNT3AP56704 352 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 FAM193AP78312 1265 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 BRD3Q15059 726 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 ANO6Q4KMQ2 910 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 ZNF280DQ6N043 979 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 ABHD15Q6UXT9 468 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 CLEC14AQ86T13 490 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 SAPCD2Q86UD0 394 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 NUDT10Q8NFP7 164 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 NSUN6Q8TEA1 469 aaKnown RBP5.79□□□□□ -1.48
CD44-220ENST00000525688 LPPQ93052 612 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 NUDT11Q96G61 164 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 AJUBAQ96IF1 538 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 YTHDC1Q96MU7 727 aaKnown RBP5.79□□□□□ -1.48
CD44-220ENST00000525688 CGRRF1Q99675 332 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 PTPN18Q99952 460 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 PCDHB1Q9Y5F3 818 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 IRAK3Q9Y616 596 aa5.79□□□□□ -1.48
CD44-220ENST00000525688 RAPGEF2Q9Y4G8 1499 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 FGAP02671 866 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 MYBP10242 640 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 CD53P19397 219 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 HTR1BP28222 390 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 SLC6A9P48067 706 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 STAT5BP51692 787 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 ZNF280AP59817 542 aaPredicted RBP5.78□□□□□ -1.48
CD44-220ENST00000525688 CDC42EP1Q00587 391 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 POU5F1BQ06416 359 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 SEMA5AQ13591 1074 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 ZRSR2Q15696 482 aaKnown RBP5.78□□□□□ -1.48
CD44-220ENST00000525688 ERCC6L2Q5T890 1561 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 IL31Q6EBC2 164 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 NPNTQ6UXI9 565 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 Q6ZUG5 572 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 Q6ZVL8 140 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 DRC7Q8IY82 874 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 FAM156AQ8NDB6 213 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 CYFIP2Q96F07 1278 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 UIMC1Q96RL1 719 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 MPHOSPH6Q99547 160 aaKnown RBP5.78□□□□□ -1.48
CD44-220ENST00000525688 MANSC1Q9H8J5 431 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 L2HGDHQ9H9P8 463 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 MAP3K20Q9NYL2 800 aaKnown RBP5.78□□□□□ -1.48
CD44-220ENST00000525688 NRBP1Q9UHY1 535 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 POLHQ9Y253 713 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 SIK3Q9Y2K2 1263 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 STXBP5LQ9Y2K9 1186 aa5.78□□□□□ -1.48
CD44-220ENST00000525688 CTDP1Q9Y5B0 961 aaPredicted RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms