RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 MTRQ99707 1265 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 TMEM117Q9H0C3 514 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 SLITRK6Q9H5Y7 841 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 HOXC10Q9NYD6 342 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 DONSONQ9NYP3 566 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 TNS2Q63HR2 1409 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 POLRMTO00411 1230 aaKnown RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 GABPAQ06546 454 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 LONRF1Q17RB8 773 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 WDR72Q3MJ13 1102 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 ZBED8Q8IZ13 594 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 MCUQ8NE86 351 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 MDM1Q8TC05 714 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 CCT8L2Q96SF2 557 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 CBWD1Q9BRT8 395 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 TOM1L1O75674 476 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 PSMC1P62191 440 aaKnown RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 COG2Q14746 738 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 IL17RAQ96F46 866 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 PNMA5Q96PV4 448 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 POP1Q99575 1024 aaKnown RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 FIS1Q9Y3D6 152 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 SCINQ9Y6U3 715 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 FOXP2O15409 715 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 GPD1LQ8N335 351 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 MAML1Q92585 1016 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 TAAR1Q96RJ0 339 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 MIS12Q9H081 205 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 JPH1Q9HDC5 661 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-204ENST00000519664 AGPAT3Q9NRZ7 376 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 SLC9A2Q9UBY0 812 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 USP20Q9Y2K6 914 aa12.47□□□□□ -0.41
SYNPO-204ENST00000519664 A0A1W2PQJ5 194 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 SFNP31947 248 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 PPM1FP49593 454 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 CORO7P57737 925 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 GIT2Q14161 759 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 RSRC2Q7L4I2 434 aaKnown RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 RIOX1Q9H6W3 641 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 ACTR5Q9H9F9 607 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 ZNF446Q9NWS9 450 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 RNF225M0QZC1 329 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 KIF3CO14782 793 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 TBX3O15119 743 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 LDHAP00338 332 aaKnown RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 KYNUQ16719 465 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 RAPH1Q70E73 1250 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 CATSPER4Q7RTX7 472 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 PCGF5Q86SE9 256 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 ANKMY2Q8IV38 441 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 PDCD7Q8N8D1 485 aaKnown RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 MIPOL1Q8TD10 442 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 RAB3IPQ96QF0 476 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-204ENST00000519664 SH3GL3Q99963 347 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 SNX25Q9H3E2 840 aa12.46□□□□□ -0.41
SYNPO-204ENST00000519664 KCNA1Q09470 495 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 IL17AQ16552 155 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 IZUMO3Q5VZ72 239 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 EPM2AIP1Q7L775 607 aaPredicted RBP12.46□□□□□ -0.42
SYNPO-204ENST00000519664 CBWD2Q8IUF1 395 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 HIPK4Q8NE63 616 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 ACSF2Q96CM8 615 aaPredicted RBP12.46□□□□□ -0.42
SYNPO-204ENST00000519664 FAF2Q96CS3 445 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 ATG4CQ96DT6 458 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 LRRC4Q9HBW1 653 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 BLOC1S4Q9NUP1 217 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 COL5A2P05997 1499 aaPredicted RBP12.46□□□□□ -0.42
SYNPO-204ENST00000519664 UBE4BO95155 1302 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 MYO3BQ8WXR4 1341 aa12.46□□□□□ -0.42
SYNPO-204ENST00000519664 TMEM150BA6NC51 233 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 MED7O43513 233 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 RTN2O75298 545 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 GLI1P08151 1106 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 MDH1P40925 334 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 PDIA2Q13087 525 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ZNF571Q7Z3V5 609 aaPredicted RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 RNF168Q8IYW5 571 aaPredicted RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 INPP5FQ9Y2H2 1132 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 PITPNM2Q9BZ72 1349 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 MYCP01106 439 aaPredicted RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SMARCA1P28370 1054 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 LSP1P33241 339 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 SOX10P56693 466 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 MICALL2Q8IY33 904 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 CCT6BQ92526 530 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 HVCN1Q96D96 273 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 FAM81BQ96LP2 452 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 RPS6KC1Q96S38 1066 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 VIPAS39Q9H9C1 493 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ARL4AP40617 200 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 PPM1NQ8N819 430 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 HNRNPLLQ8WVV9 542 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 CDKL2Q92772 493 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 MXRA8Q9BRK3 442 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 TARS2Q9BW92 718 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 WNT8AQ9H1J5 351 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ACAD9Q9H845 621 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 CNOT7Q9UIV1 285 aaKnown RBP12.45□□□□□ -0.42
SYNPO-204ENST00000519664 ZNRF3Q9ULT6 936 aa12.45□□□□□ -0.42
SYNPO-204ENST00000519664 PCDHAC2Q9Y5I4 1007 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms