RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SWSAP1Q6NVH7 229 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ABHD15Q6UXT9 468 aa16■□□□□ 0.15
NUP54-217ENST00000514987 EFCAB13Q8IY85 973 aa16■□□□□ 0.15
NUP54-217ENST00000514987 CHST13Q8NET6 341 aa16■□□□□ 0.15
NUP54-217ENST00000514987 DNERQ8NFT8 737 aa16■□□□□ 0.15
NUP54-217ENST00000514987 RUNDC3BQ96NL0 473 aa16■□□□□ 0.15
NUP54-217ENST00000514987 DDX47Q9H0S4 455 aaKnown RBP16■□□□□ 0.15
NUP54-217ENST00000514987 CYP26B1Q9NR63 512 aa16■□□□□ 0.15
NUP54-217ENST00000514987 RAB20Q9NX57 234 aa16■□□□□ 0.15
NUP54-217ENST00000514987 TAS2R14Q9NYV8 317 aa16■□□□□ 0.15
NUP54-217ENST00000514987 UVRAGQ9P2Y5 699 aa16■□□□□ 0.15
NUP54-217ENST00000514987 FAM153AQ9UHL3 310 aa16■□□□□ 0.15
NUP54-217ENST00000514987 CD2APQ9Y5K6 639 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ALG6Q9Y672 507 aa16■□□□□ 0.15
NUP54-217ENST00000514987 KIAA1217Q5T5P2 1943 aa16■□□□□ 0.15
NUP54-217ENST00000514987 GOLGA6L10A6NI86 522 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ZNF233A6NK53 670 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ERLIN2O94905 339 aa16■□□□□ 0.15
NUP54-217ENST00000514987 SUPT20HL2P0C7V6 817 aa16■□□□□ 0.15
NUP54-217ENST00000514987 GBP1P32455 592 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ICAM3P32942 547 aa16■□□□□ 0.15
NUP54-217ENST00000514987 PDE6CP51160 858 aa16■□□□□ 0.15
NUP54-217ENST00000514987 GUCY2FP51841 1108 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ACTR2P61160 394 aa16■□□□□ 0.15
NUP54-217ENST00000514987 CDR2Q01850 454 aa16■□□□□ 0.15
NUP54-217ENST00000514987 GCNT1Q02742 428 aa16■□□□□ 0.15
NUP54-217ENST00000514987 SUPT20HL1Q3ZLR7 823 aa16■□□□□ 0.15
NUP54-217ENST00000514987 DHX38Q92620 1227 aaKnown RBP16■□□□□ 0.15
NUP54-217ENST00000514987 ZKSCAN4Q969J2 545 aaPredicted RBP16■□□□□ 0.15
NUP54-217ENST00000514987 SAAL1Q96ER3 474 aa16■□□□□ 0.15
NUP54-217ENST00000514987 WNK4Q96J92 1243 aa16■□□□□ 0.15
NUP54-217ENST00000514987 KREMEN1Q96MU8 473 aa16■□□□□ 0.15
NUP54-217ENST00000514987 SH2D3AQ9BRG2 576 aa16■□□□□ 0.15
NUP54-217ENST00000514987 CAPS2Q9BXY5 557 aa16■□□□□ 0.15
NUP54-217ENST00000514987 ARHGAP28Q9P2N2 729 aa16■□□□□ 0.15
NUP54-217ENST00000514987 SEPT9Q9UHD8 586 aaPredicted RBP16■□□□□ 0.15
NUP54-217ENST00000514987 COG5Q9UP83 839 aa16■□□□□ 0.15
NUP54-217ENST00000514987 HMGB1P1B2RPK0 211 aaPredicted RBP15.99■□□□□ 0.15
NUP54-217ENST00000514987 HNRNPDLO14979 420 aaKnown RBP15.99■□□□□ 0.15
NUP54-217ENST00000514987 PPFIA4O75335 1185 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 SGPL1O95470 568 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 CYP1A2P05177 515 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 CHRNB2P17787 502 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 BPIFB4P59827 614 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 PRKCEQ02156 737 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 LRRC31Q6UY01 552 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 NOP9Q86U38 636 aaKnown RBP15.99■□□□□ 0.15
NUP54-217ENST00000514987 PALB2Q86YC2 1186 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 HELQQ8TDG4 1101 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 BSNDQ8WZ55 320 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 SEMA4DQ92854 862 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 CCDC127Q96BQ5 260 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 BICD1Q96G01 975 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 RASAL2Q9UJF2 1139 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 GTF3C4Q9UKN8 822 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 BCS1LQ9Y276 419 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 LOC285556D6RIA3 1793 aa15.99■□□□□ 0.15
NUP54-217ENST00000514987 CYP26A1O43174 497 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 EXTL3O43909 919 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 RGS20O76081 388 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ITGA4P13612 1032 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 CYP11B1P15538 503 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 DRG2P55039 364 aaKnown RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 POU5F1Q01860 360 aaKnown RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 STRN3Q13033 797 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 PRPF4BQ13523 1007 aaKnown RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 STXBP2Q15833 593 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 TTMPQ5BVD1 217 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 SH3D19Q5HYK7 790 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ANGEL2Q5VTE6 544 aaKnown RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 SLFN12LQ6IEE8 588 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 SLC39A4Q6P5W5 647 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ZNF677Q86XU0 584 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ZSWIM2Q8NEG5 633 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 PIK3R5Q8WYR1 880 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ZBTB9Q96C00 473 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 KLRG1Q96E93 195 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ZSWIM1Q9BR11 485 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 POLR3FQ9H1D9 316 aaPredicted RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 A1CFQ9NQ94 594 aaKnown RBP15.98■□□□□ 0.15
NUP54-217ENST00000514987 FBXO40Q9UH90 709 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 AMACRQ9UHK6 382 aa15.98■□□□□ 0.15
NUP54-217ENST00000514987 ATG7O95352 703 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 ZBTB7AO95365 584 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 CTNNA2P26232 953 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 ECHS1P30084 290 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 CHRNA3P32297 505 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 IRAK1P51617 712 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 CLDN10P78369 228 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 DR1Q01658 176 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 FMO1Q01740 532 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 PSMD6Q15008 389 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 PTPROQ16827 1216 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 SEL1L2Q5TEA6 688 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 DCAF12L1Q5VU92 463 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 ACAD10Q6JQN1 1059 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 RUFY4Q6ZNE9 571 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 SV2AQ7L0J3 742 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 ARL8AQ96BM9 186 aa15.97■□□□□ 0.15
NUP54-217ENST00000514987 TRIM11Q96F44 468 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms