RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FAM153AQ9UHL3 310 aa11.84□□□□□ -0.51
LIMCH1-217ENST00000512946 TOM1O60784 492 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 TBXAS1P24557 533 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RAD23AP54725 363 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ZBED8Q8IZ13 594 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 MMGT1Q8N4V1 131 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 STKLD1Q8NE28 680 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 SERPINB12Q96P63 405 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 SH3GLB2Q9NR46 395 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RIC8BQ9NVN3 520 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RSL24D1Q9UHA3 163 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 GINS2Q9Y248 185 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 C5orf58C9J3I9 102 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 PI4K2BG5E9Z4 385 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 CNOT3O75175 753 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 TNFAIP8O95379 198 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 MMRN1Q13201 1228 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 TAF2Q6P1X5 1199 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 SUPT20HQ8NEM7 779 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 CNDP1Q96KN2 507 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 TINF2Q9BSI4 451 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 KLHL4Q9C0H6 718 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ENOPH1Q9UHY7 261 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ITM2BQ9Y287 266 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RPAP1Q9BWH6 1393 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 PRG4Q92954 1404 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 F8VZ95 297 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RNF103O00237 685 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 PRPF3O43395 683 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 THRAP10827 490 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RCAN1P53805 252 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ALDH18A1P54886 795 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 C21orf59P57076 290 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ROR2Q01974 943 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ARHGEF16Q5VV41 709 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 APBB2Q92870 758 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM193BQ96PV7 902 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 DEPDC7Q96QD5 511 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 MTA3Q9BTC8 594 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 IMPAD1Q9NX62 359 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 GGA1Q9UJY5 639 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 GRID1Q9ULK0 1009 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 CDYLQ9Y232 598 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ITIH6Q6UXX5 1313 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 ENO3P13929 434 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 GCKRQ14397 625 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 C16orf72Q14CZ0 275 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 LRRC14Q15048 493 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 BEST2Q8NFU1 509 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 DIS3LQ8TF46 1054 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RNF139Q8WU17 664 aa11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 DDX47Q9H0S4 455 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-217ENST00000512946 RNMTO43148 476 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 SASH1O94885 1247 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM58BPP0C7Q3 252 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ZAP70P43403 619 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 GPS1Q13098 491 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ITGB3BPQ13352 177 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 NCAPHQ15003 741 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 HEATR6Q6AI08 1181 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PPP4R4Q6NUP7 873 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 IYDQ6PHW0 289 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF786Q8N393 782 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ZBTB38Q8NAP3 1195 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 VPS37AQ8NEZ2 397 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 C1orf50Q9BV19 199 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 FSD1LQ9BXM9 530 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 HERC5Q9UII4 1024 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 MCM8Q9UJA3 840 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 STON1Q9Y6Q2 735 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 HMGXB3Q12766 1538 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 TAF5LO75529 589 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 HADHAP40939 763 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 LIFRP42702 1097 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 CCT3P49368 545 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 SNAP25P60880 206 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ACTR2P61160 394 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ROR1Q01973 937 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 DGUOKQ16854 277 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 TBC1D10BQ4KMP7 808 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 LVRNQ6Q4G3 990 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC60Q8IWA6 550 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 HPS3Q969F9 1004 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 LIMA1Q9UHB6 759 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 MAD2L2Q9UI95 211 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PSTPIP1O43586 416 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ATP6V1B1P15313 513 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 CCT8P50990 548 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PTH1RQ03431 593 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 ILF2Q12905 390 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RCN1Q15293 331 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 POTEEQ6S8J3 1075 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RHPN2Q8IUC4 686 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PALD1Q9ULE6 856 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 SUGT1Q9Y2Z0 365 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 EVPLLA8MZ36 301 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 RGS5O15539 181 aa11.82□□□□□ -0.52
LIMCH1-217ENST00000512946 PHF2O75151 1096 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms