RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 SEPT9Q9UHD8 586 aaPredicted RBP12.97□□□□□ -0.33
RNF4-216ENST00000511859 IGHDP01880 384 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 ITGA4P13612 1032 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 TARSP26639 723 aaKnown RBP12.96□□□□□ -0.33
RNF4-216ENST00000511859 HOXA11P31270 313 aaPredicted RBP12.96□□□□□ -0.33
RNF4-216ENST00000511859 MTAPQ13126 283 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 COL9A2Q14055 689 aaPredicted RBP12.96□□□□□ -0.33
RNF4-216ENST00000511859 KSR1Q8IVT5 923 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 LENG9Q96B70 501 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 IER2Q9BTL4 223 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 PHF20Q9BVI0 1012 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 C6orf50Q9HD87 102 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 FRYQ5TBA9 3013 aa12.96□□□□□ -0.33
RNF4-216ENST00000511859 NOTCH4Q99466 2003 aa12.96□□□□□ -0.34
RNF4-216ENST00000511859 PKD1L2Q7Z442 2459 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 ESYT2A0FGR8 921 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 ARL5CA6NH57 179 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 MSH4O15457 936 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 GAS7O60861 476 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 GSPT1P15170 499 aaKnown RBP12.95□□□□□ -0.34
RNF4-216ENST00000511859 GNA11P29992 359 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 HOXA9P31269 272 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 SHC2P98077 582 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 CSRP2Q16527 193 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 RTN1Q16799 776 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 UBXN11Q5T124 520 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 TTC22Q5TAA0 569 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 FUT10Q6P4F1 479 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 APOA5Q6Q788 366 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 TPRG1Q6ZUI0 275 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 EXOC8Q8IYI6 725 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 REXO1Q8N1G1 1221 aaKnown RBP12.95□□□□□ -0.34
RNF4-216ENST00000511859 CCDC12Q8WUD4 166 aaPredicted RBP12.95□□□□□ -0.34
RNF4-216ENST00000511859 TEKT3Q9BXF9 490 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 GPR62Q9BZJ7 368 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 SH2B1Q9NRF2 756 aaPredicted RBP12.95□□□□□ -0.34
RNF4-216ENST00000511859 SEMA4GQ9NTN9 838 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 KCNH3Q9ULD8 1083 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 COL4A3Q01955 1670 aa12.95□□□□□ -0.34
RNF4-216ENST00000511859 MAN2B1O00754 1011 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 XYLBO75191 536 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 STBD1O95210 358 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 PMLP29590 882 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 USP11P51784 963 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 PCBP1Q15365 356 aaKnown RBP eCLIP12.94□□□□□ -0.34
RNF4-216ENST00000511859 PPM1LQ5SGD2 360 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 LIN9Q5TKA1 542 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 LRCH2Q5VUJ6 765 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 PRR23CQ6ZRP0 262 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 MIER3Q7Z3K6 550 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 GLYCTKQ8IVS8 523 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 SMG8Q8ND04 991 aaKnown RBP12.94□□□□□ -0.34
RNF4-216ENST00000511859 SLC5A5Q92911 643 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 GAD1Q99259 594 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 KXD1Q9BQD3 176 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 LRRC2Q9BYS8 371 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 UNC45AQ9H3U1 944 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 MIOSQ9NXC5 875 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 FBXW11Q9UKB1 542 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 COL4A3BPQ9Y5P4 624 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 ZZEF1O43149 2961 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 ZFYVE26Q68DK2 2539 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 DDX11L8A8MPP1 907 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 ZBTB43O43298 467 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 CHMP2AO43633 222 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 ECI2O75521 394 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 POU2F2P09086 479 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 TDGF1P13385 188 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 AXLP30530 894 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 CNR2P34972 360 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 NTHL1P78549 312 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 LPAL2Q16609 132 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 PFKFB3Q16875 520 aaPredicted RBP12.94□□□□□ -0.34
RNF4-216ENST00000511859 UVSSAQ2YD98 709 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 IL31Q6EBC2 164 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 PRR23BQ6ZRT6 265 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 RTL10Q7L3V2 364 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 B3GALT6Q96L58 329 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 SH2D3AQ9BRG2 576 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 CHRDQ9H2X0 955 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 HEBP1Q9NRV9 189 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 RALYQ9UKM9 306 aaKnown RBP12.94□□□□□ -0.34
RNF4-216ENST00000511859 ADAM28Q9UKQ2 775 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 POLIQ9UNA4 740 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 GIT1Q9Y2X7 761 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 IPPQ9Y573 584 aa12.94□□□□□ -0.34
RNF4-216ENST00000511859 SPAG17Q6Q759 2223 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 ASAP2O43150 1006 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 TADA2AO75478 443 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 C8AP07357 584 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 SRGAP2CP0DJJ0 459 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 RPL17P18621 184 aaKnown RBP12.93□□□□□ -0.34
RNF4-216ENST00000511859 SCNN1GP51170 649 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 CCR3P51677 355 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 NCBP1Q09161 790 aaKnown RBP12.93□□□□□ -0.34
RNF4-216ENST00000511859 SIM2Q14190 667 aaPredicted RBP12.93□□□□□ -0.34
RNF4-216ENST00000511859 N4BP2L1Q5TBK1 243 aaPredicted RBP12.93□□□□□ -0.34
RNF4-216ENST00000511859 ITFG1Q8TB96 612 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 BICD2Q8TD16 824 aa12.93□□□□□ -0.34
RNF4-216ENST00000511859 PRPF31Q8WWY3 499 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms