RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 FAM189BP81408 668 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 HS2ST1Q7LGA3 356 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 NPAS4Q8IUM7 802 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 SMG8Q8ND04 991 aaKnown RBP32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 SLC9A7Q96T83 725 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 KCTD10Q9H3F6 313 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 TMEM161AQ9NX61 479 aa32.38■■■□□ 2.77
LIMCH1-211ENST00000509638 ADSSP30520 456 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 ZNF598Q86UK7 904 aaKnown RBP32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 TDHQ8IZJ6 230 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 CEP120Q8N960 986 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 POMGNT1Q8WZA1 660 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 MSTO1Q9BUK6 570 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 AGPAT3Q9NRZ7 376 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 LRFN2Q9ULH4 789 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 STYXL1Q9Y6J8 313 aa32.37■■■□□ 2.77
LIMCH1-211ENST00000509638 A0A0B4J269 797 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 ZNF623O75123 536 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 UPP2O95045 317 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 ATP2A2P16615 1042 aaKnown RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 STIM1Q13586 685 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 PRPF38BQ5VTL8 546 aaKnown RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 SLFN12LQ6IEE8 588 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 ADSSL1Q8N142 457 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 LPPQ93052 612 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 CBWD1Q9BRT8 395 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 APOL6Q9BWW8 343 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 TYW1Q9NV66 732 aaKnown RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 PCDHB7Q9Y5E2 793 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 RALGAPA2Q2PPJ7 1873 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 FNDC1Q4ZHG4 1894 aaPredicted RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 COL4A6Q14031 1691 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 MEIS3P2A8K0S8 358 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 CD44P16070 742 aaKnown RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 FAM117BQ6P1L5 589 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 ARMCX5Q6P1M9 558 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 CRIPAKQ8N1N5 446 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 TOP1MTQ969P6 601 aa32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 ELAC1Q9H777 363 aaKnown RBP32.36■■■□□ 2.77
LIMCH1-211ENST00000509638 STAG3L1P0CL83 205 aa32.35■■■□□ 2.77
LIMCH1-211ENST00000509638 HACE1Q8IYU2 909 aa32.35■■■□□ 2.77
LIMCH1-211ENST00000509638 RNF216Q9NWF9 866 aaPredicted RBP32.35■■■□□ 2.77
LIMCH1-211ENST00000509638 TRIOBPQ9H2D6 2365 aa32.35■■■□□ 2.77
LIMCH1-211ENST00000509638 EOMESO95936 686 aa32.34■■■□□ 2.77
LIMCH1-211ENST00000509638 MRPL10Q7Z7H8 261 aaKnown RBP32.34■■■□□ 2.77
LIMCH1-211ENST00000509638 THNSL1Q8IYQ7 743 aa32.34■■■□□ 2.77
LIMCH1-211ENST00000509638 GOLGA5Q8TBA6 731 aa32.34■■■□□ 2.77
LIMCH1-211ENST00000509638 PGBD4Q96DM1 585 aa32.34■■■□□ 2.77
LIMCH1-211ENST00000509638 TRIP11Q15643 1979 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 PSMA7O14818 248 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 FGFR1P11362 822 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 ITGA4P13612 1032 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 GARTP22102 1010 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 OSTNP61366 133 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 DPCR1Q3MIW9 517 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 SEZ6Q53EL9 994 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 KLHL10Q6JEL2 608 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 HERC6Q8IVU3 1022 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 PHOSPHO2Q8TCD6 241 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 RNF39Q9H2S5 420 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 SNTG2Q9NY99 539 aa32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 AGO2Q9UKV8 859 aaKnown RBP32.33■■■□□ 2.77
LIMCH1-211ENST00000509638 PPP1R3GB7ZBB8 358 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 PDXKO00764 312 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 CLIC2O15247 247 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 OGTO15294 1046 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 FAM189A1O60320 539 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 AKAP5P24588 427 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 PPP1R2P41236 205 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 GRM5P41594 1212 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 SNRPFP62306 86 aaKnown RBP32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 FAM109BQ6ICB4 259 aaPredicted RBP32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 PCIF1Q9H4Z3 704 aa32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 CGNQ9P2M7 1197 aaKnown RBP32.32■■■□□ 2.77
LIMCH1-211ENST00000509638 RECQL4O94761 1208 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 GJB5O95377 273 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 NLRP12P59046 1061 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 ZCWPW2Q504Y3 356 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 ZBTB41Q5SVQ8 909 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 AGMOQ6ZNB7 445 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 TMEM192Q8IY95 271 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 SAAL1Q96ER3 474 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 CCDC94Q9BW85 323 aaPredicted RBP32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 SEMA6BQ9H3T3 888 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 CTNND2Q9UQB3 1225 aa32.32■■■□□ 2.76
LIMCH1-211ENST00000509638 ANK1P16157 1881 aa32.31■■■□□ 2.76
LIMCH1-211ENST00000509638 SASS6Q6UVJ0 657 aa32.31■■■□□ 2.76
LIMCH1-211ENST00000509638 RSAD1Q9HA92 442 aa32.31■■■□□ 2.76
LIMCH1-211ENST00000509638 RNF19AQ9NV58 838 aa32.31■■■□□ 2.76
LIMCH1-211ENST00000509638 HSPBP1Q9NZL4 362 aa32.31■■■□□ 2.76
LIMCH1-211ENST00000509638 PDCD11Q14690 1871 aaKnown RBP32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 GATMP50440 423 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 CYP2J2P51589 502 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 CLLU1OSQ5K130 101 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 MLKLQ8NB16 471 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 PARP2Q9UGN5 583 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 COLQQ9Y215 455 aaPredicted RBP32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 TRAF3IP3Q9Y228 551 aa32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 TDRD15B5MCY1 1934 aaKnown RBP32.3■■■□□ 2.76
LIMCH1-211ENST00000509638 CALUO43852 315 aaPredicted RBP32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms