RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 UBXN11Q5T124 520 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 AKNAD1Q5T1N1 836 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 RSPO2Q6UXX9 243 aaPredicted RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 STK32CQ86UX6 486 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 TBC1D16Q8TBP0 767 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 PHOSPHO1Q8TCT1 267 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP54-217ENST00000498213 RTF1Q92541 710 aaKnown RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 TMPRSS5Q9H3S3 457 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 ARHGEF4Q9NR80 690 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 DTLQ9NZJ0 730 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 NUB1Q9Y5A7 615 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 TAF1P21675 1872 aa5.04□□□□□ -1.6
USP54-217ENST00000498213 TPRP12270 2363 aaKnown RBP5.04□□□□□ -1.6
USP54-217ENST00000498213 CLRN2A0PK11 232 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 PDPK1O15530 556 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 APPP05067 770 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 GNAT1P11488 350 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 GRK2P25098 689 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 THBS2P35442 1172 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 GRK3P35626 688 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 ITGA1P56199 1179 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 SSRP1Q08945 709 aaKnown RBP5.03□□□□□ -1.6
USP54-217ENST00000498213 SPIRE1Q08AE8 756 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 EFEMP1Q12805 493 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 SUPT20HL1Q3ZLR7 823 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 PARP10Q53GL7 1025 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 EMC4Q5J8M3 183 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 FAM124AQ86V42 546 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 TRIM48Q8IWZ4 208 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 LINC00482Q8N8I6 264 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 CELF1Q92879 486 aaKnown RBP5.03□□□□□ -1.6
USP54-217ENST00000498213 ZNF669Q96BR6 464 aaPredicted RBP5.03□□□□□ -1.6
USP54-217ENST00000498213 CLIC6Q96NY7 704 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 ZFYVE21Q9BQ24 234 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 ALG1Q9BT22 464 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 BDH2Q9BUT1 245 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 SPATA9Q9BWV2 254 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 JAM3Q9BX67 310 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 SMOC1Q9H4F8 434 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 PFDN2Q9UHV9 154 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 ANKRD11Q6UB99 2663 aaPredicted RBP5.03□□□□□ -1.6
USP54-217ENST00000498213 UBR2Q8IWV8 1755 aa5.03□□□□□ -1.6
USP54-217ENST00000498213 TCRBV5S2A0A599 114 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 MED19A0JLT2 244 aaPredicted RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 MSCO60682 206 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 CYP7B1O75881 506 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 UFL1O94874 794 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 HMOX1P09601 288 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 HSPA5P11021 654 aaKnown RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 CETPP11597 493 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 RPL13P26373 211 aaKnown RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 GPR85P60893 370 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 DLX2Q07687 328 aaPredicted RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 AAK1Q2M2I8 961 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 HSP90AB3PQ58FF7 597 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 SLC10A5Q5PT55 438 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 IFNL3Q8IZI9 196 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 ARRDC4Q8NCT1 418 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 IL17REQ8NFR9 667 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 PIP4K2CQ8TBX8 421 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 ADAMTS17Q8TE56 1095 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 BADQ92934 168 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 TIFAQ96CG3 184 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 RNPC3Q96LT9 517 aaKnown RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 ZSWIM3Q96MP5 696 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 WRNIP1Q96S55 665 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 KCNJ15Q99712 375 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 UTP14AQ9BVJ6 771 aaKnown RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 VEZTQ9HBM0 779 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 SPATA6Q9NWH7 488 aaPredicted RBP5.02□□□□□ -1.61
USP54-217ENST00000498213 SIRPGQ9P1W8 387 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 PCDHAC2Q9Y5I4 1007 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 NCOR2Q9Y618 2525 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 CHD6Q8TD26 2715 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 WDFY4Q6ZS81 3184 aa5.02□□□□□ -1.61
USP54-217ENST00000498213 MAP3K15Q6ZN16 1313 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 USP34Q70CQ2 3546 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 KMT2BQ9UMN6 2715 aaPredicted RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 BLACEA4D250 179 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 FAM47E-STBD1D6RA91 191 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 PDHXO00330 501 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 TNPO2O14787 897 aaKnown RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 TADA3O75528 432 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 CYP1A1P04798 512 aaPredicted RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 COL6A1P12109 1028 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 INSRRP14616 1297 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 CNR2P34972 360 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 RASGRF1Q13972 1273 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 VGLL4Q14135 290 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 TAF7Q15545 349 aaPredicted RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 YOD1Q5VVQ6 348 aaPredicted RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 BORAQ6PGQ7 559 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 KCNT2Q6UVM3 1135 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 LBX2Q6XYB7 198 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 KIF6Q6ZMV9 814 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 SPATC1Q76KD6 591 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 PPP1R42Q7Z4L9 355 aa5.01□□□□□ -1.61
USP54-217ENST00000498213 MTDHQ86UE4 582 aaKnown RBP5.01□□□□□ -1.61
USP54-217ENST00000498213 ZNF761Q86XN6 746 aaPredicted RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms