RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 SPATA20Q8TB22 786 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 CCDC94Q9BW85 323 aaPredicted RBP18.71■□□□□ 0.59
HDAC6-235ENST00000495515 FGFBP2Q9BYJ0 223 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 TMEM117Q9H0C3 514 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 GBP3Q9H0R5 595 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 NUP62CLQ9H1M0 184 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 CDT1Q9H211 546 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 CLSTN2Q9H4D0 955 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 RSAD1Q9HA92 442 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 GIT1Q9Y2X7 761 aa18.71■□□□□ 0.59
HDAC6-235ENST00000495515 FGFR1P11362 822 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 HARSP12081 509 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 YARSP54577 528 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 SNRPFP62306 86 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 BTG3Q14201 252 aaPredicted RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 CAMK4Q16566 473 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 HS2ST1Q7LGA3 356 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 CMTR2Q8IYT2 770 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 GLIS3Q8NEA6 775 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 GOLGA5Q8TBA6 731 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 SCFD1Q8WVM8 642 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 APOL6Q9BWW8 343 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 MRPL9Q9BYD2 267 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 PBX4Q9BYU1 374 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 NXF3Q9H4D5 531 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 CGNQ9P2M7 1197 aaKnown RBP18.7■□□□□ 0.58
HDAC6-235ENST00000495515 PARP2Q9UGN5 583 aa18.7■□□□□ 0.58
HDAC6-235ENST00000495515 TTC3P53804 2025 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 RANBP2P49792 3224 aaKnown RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 TBKBP1A7MCY6 615 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 GRM5P41594 1212 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 KCNA1Q09470 495 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 HSP90AA2PQ14568 343 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 KNOP1Q1ED39 458 aaKnown RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 ZNF658Q5TYW1 1059 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 AGMOQ6ZNB7 445 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 FIBCD1Q8N539 461 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 KIAA0895Q8NCT3 520 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 URGCPQ8TCY9 931 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 GPT2Q8TD30 523 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 POMGNT1Q8WZA1 660 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 LPPQ93052 612 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 ZNF689Q96CS4 500 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 ZBTB45Q96K62 511 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 MSTO1Q9BUK6 570 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 TOPORSQ9NS56 1045 aaPredicted RBP18.69■□□□□ 0.58
HDAC6-235ENST00000495515 KANSL3Q9P2N6 904 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 HES2Q9Y543 173 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 STYXL1Q9Y6J8 313 aa18.69■□□□□ 0.58
HDAC6-235ENST00000495515 ZMYM2Q9UBW7 1377 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 A0A0B4J269 797 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 ANKRD63C9JTQ0 380 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 SOX1O00570 391 aaPredicted RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 ABLIM1O14639 778 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 KIAA0391O15091 583 aaKnown RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 OGTO15294 1046 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 GARTP22102 1010 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 DNAJB2P25686 324 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 PPP1R2P41236 205 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 NELFCDQ8IXH7 590 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 THNSL1Q8IYQ7 743 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 LRRC43Q8N309 656 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 GUF1Q8N442 669 aaKnown RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 SP7Q8TDD2 431 aaPredicted RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 HELQQ8TDG4 1101 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 ERCC4Q92889 916 aaPredicted RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 TIFAQ96CG3 184 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 ACAP3Q96P50 834 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 SLC28A3Q9HAS3 691 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 RC3H2Q9HBD1 1191 aaKnown RBP18.68■□□□□ 0.58
HDAC6-235ENST00000495515 SNTG2Q9NY99 539 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 KIAA1468Q9P260 1216 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 GDAQ9Y2T3 454 aa18.68■□□□□ 0.58
HDAC6-235ENST00000495515 OFD1O75665 1012 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 LDHAP00338 332 aaKnown RBP18.67■□□□□ 0.58
HDAC6-235ENST00000495515 CA3P07451 260 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 CLTAP09496 248 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 AKAP5P24588 427 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 PBX2P40425 430 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 STIM1Q13586 685 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 PAN2Q504Q3 1202 aaKnown RBP18.67■□□□□ 0.58
HDAC6-235ENST00000495515 NOMO2Q5JPE7 1267 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 CLLU1OSQ5K130 101 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 ARMCX5Q6P1M9 558 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 SLC39A4Q6P5W5 647 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 TRIML1Q8N9V2 468 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 CASD1Q96PB1 797 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 RPS6KC1Q96S38 1066 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 RNF39Q9H2S5 420 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 MAN1B1Q9UKM7 699 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 AGO2Q9UKV8 859 aaKnown RBP18.67■□□□□ 0.58
HDAC6-235ENST00000495515 INPP5FQ9Y2H2 1132 aa18.67■□□□□ 0.58
HDAC6-235ENST00000495515 TMEM265A0A087WTH1 108 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 CARNS1A5YM72 827 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 RECQL4O94761 1208 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 MLH1P40692 756 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 OSTNP61366 133 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 RNASELQ05823 741 aaKnown RBP18.66■□□□□ 0.58
HDAC6-235ENST00000495515 COBLL1Q53SF7 1204 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 PPP2R2DQ66LE6 453 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms