RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CYP26A1O43174 497 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 TMEM253P0C7T8 217 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 SLC47A2Q86VL8 602 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 SLC9A9Q8IVB4 645 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 LMBR1Q8WVP7 490 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 DHX38Q92620 1227 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 RUBCNQ92622 972 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 PCDHB18PQ96TA0 734 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 KIAA1683Q9H0B3 1180 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 CTTNBP2NLQ9P2B4 639 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 CD2APQ9Y5K6 639 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 H0YGN5 161 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 DDX3YO15523 660 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 CPP00450 1065 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 MXI1P50539 228 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 IFI35P80217 286 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 PRKG1Q13976 671 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 NEK9Q8TD19 979 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 KRT35Q92764 455 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 TMEM206Q9H813 350 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 RNF146Q9NTX7 359 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 HACL1Q9UJ83 578 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 NFS1Q9Y697 457 aa17.79■□□□□ 0.44
CCDC88B-210ENST00000494566 A0A0A6YYK5 440 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 FAM107AO95990 144 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 MAP3K10Q02779 954 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 PPATQ06203 517 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 LMBRD2Q68DH5 695 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 KREMEN1Q96MU8 473 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 DEFB129Q9H1M3 183 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 UTP11Q9Y3A2 253 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 CTNND1O60716 968 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 NPTX2P47972 431 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 EPC2Q52LR7 807 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 MICALL2Q8IY33 904 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 SYCE1Q8N0S2 351 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 SEC16BQ96JE7 1060 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 PI4K2AQ9BTU6 479 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 SLC40A1Q9NP59 571 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 GABBR1Q9UBS5 961 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 DBR1Q9UK59 544 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 DENND3A2RUS2 1198 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 VWA5AO00534 786 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 DLATP10515 647 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 HMGCS2P54868 508 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 PPP2R2AP63151 447 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 KIF22Q14807 665 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 SNRNP35Q16560 246 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 FAM133BQ5BKY9 247 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 TMC3Q7Z5M5 1100 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 NOP9Q86U38 636 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 LPAR1Q92633 364 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 FAM118BQ9BPY3 351 aa17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 RGS17Q9UGC6 210 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-210ENST00000494566 NCANO14594 1321 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 ADGRA3Q8IWK6 1321 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 TCRBV7S2A1N4TA0A589 114 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 ZNF862O60290 1169 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 MMEP08473 750 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 VPS41P49754 854 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 PSMC5P62195 406 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 GTF2BQ00403 316 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 MESDQ14696 234 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 FBXO25Q8TCJ0 367 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 TAOK3Q9H2K8 898 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 AZI2Q9H6S1 392 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 TBC1D22BQ9NU19 505 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 ALG6Q9Y672 507 aa17.77■□□□□ 0.44
CCDC88B-210ENST00000494566 ZBED4O75132 1171 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 RPSAP08865 295 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 GMPSP49915 693 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 TRIP13Q15645 432 aaPredicted RBP17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 C2CD6Q53TS8 623 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 SNRNP48Q6IEG0 339 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 LRRC45Q96CN5 670 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 CEP170P1Q96L14 293 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 KLC4Q9NSK0 619 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 INTUQ9ULD6 942 aa17.77■□□□□ 0.43
CCDC88B-210ENST00000494566 ANKRD62A6NC57 917 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 WDR64B1ANS9 1081 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 CNGA1P29973 690 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 SNX1Q13596 522 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 CNPY4Q8N129 248 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 RASGEF1CQ8N431 466 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 TMEM161BQ8NDZ6 487 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 EPS8L3Q8TE67 593 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 FMO2Q99518 471 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 TBX20Q9UMR3 447 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 CES2O00748 559 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 CHRNB2P17787 502 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 ANXA13P27216 316 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 CETN1Q12798 172 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 DAB2IPQ5VWQ8 1189 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 SWSAP1Q6NVH7 229 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 TAS1R2Q8TE23 839 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 THOC1Q96FV9 657 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 ADAM33Q9BZ11 813 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 PIM2Q9P1W9 311 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 PFASO15067 1338 aa17.76■□□□□ 0.43
CCDC88B-210ENST00000494566 EIF4E1BA6NMX2 242 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms