RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KHDC1LQ5JSQ8 128 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 FKBP15Q5T1M5 1219 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 CD163Q86VB7 1156 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 TXLNBQ8N3L3 684 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 PDILTQ8N807 584 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 NAXEQ8NCW5 288 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 ZNF566Q969W8 418 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 UBXN10Q96LJ8 280 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 C19orf44Q9H6X5 657 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 CNNM1Q9NRU3 951 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 PCDHA1Q9Y5I3 950 aa5.54□□□□□ -1.52
VPS13A-212ENST00000493341 J3KRW8 73 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 NCAM2O15394 837 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SGTAO43765 313 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 ALDH9A1P49189 494 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 PRKG1Q13976 671 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 PFKFB4Q16877 469 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 HYIQ5T013 277 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 CELF5Q8N6W0 485 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 PDZD8Q8NEN9 1154 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 CCHCR1Q8TD31 782 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SAMD11Q96NU1 681 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 DMRTA2Q96SC8 542 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SORBS1Q9BX66 1292 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 OR10A5Q9H207 317 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SARS2Q9NP81 518 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SMC4Q9NTJ3 1288 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SACM1LQ9NTJ5 587 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 LMCD1Q9NZU5 365 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 FITM1A5D6W6 292 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 RRN3P2A6NIE6 340 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 C1QTNF9BB2RNN3 333 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 THP07101 528 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 ENO2P09104 434 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 NPR1P16066 1061 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 EEF1GP26641 437 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 STAT5AP42229 794 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 GALNT1Q10472 559 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 G3BP1Q13283 466 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 KCTD2Q14681 263 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 TAF5Q15542 800 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 SLC35G1Q2M3R5 365 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 C3orf38Q5JPI3 329 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 DACT2Q5SW24 774 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 TEPPQ6URK8 271 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 CYP26C1Q6V0L0 522 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 ALYREFQ86V81 257 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 MSL3Q8N5Y2 521 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 ATP11CQ8NB49 1132 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 MUL1Q969V5 352 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 PAWRQ96IZ0 340 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 FAM167AQ96KS9 214 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 BCAS3Q9H6U6 928 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 EPB41L4AQ9HCS5 686 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 PIH1D1Q9NWS0 290 aaKnown RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 STK32BQ9NY57 414 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 FEZ2Q9UHY8 353 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 GPR160Q9UJ42 338 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 FBXO2Q9UK22 296 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-212ENST00000493341 RPTORQ8N122 1335 aa5.53□□□□□ -1.52
VPS13A-212ENST00000493341 A0A1W2PPC4 97 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 GSC2O15499 205 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 RNASEH2AO75792 299 aaKnown RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SEC24DO94855 1032 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ENDOD1O94919 500 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ZBTB7AO95365 584 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 CYBBP04839 570 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SDHBP21912 280 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 CTSSP25774 331 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ITGA8P53708 1063 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PER3P56645 1201 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 NFATC3Q12968 1075 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TARDBPQ13148 414 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TAF12Q16514 161 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PAQR3Q6TCH7 311 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 GADL1Q6ZQY3 521 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 BMP8AQ7Z5Y6 402 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 IGDCC4Q8TDY8 1250 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 C18orf8Q96DM3 657 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TMX3Q96JJ7 454 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ZSCAN31Q96LW9 406 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 COLEC11Q9BWP8 271 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 MAGEH1Q9H213 219 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PRDM7Q9NQW5 492 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 HCFC2Q9Y5Z7 792 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 A0A0A6YYK5 440 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ZNF839A8K0R7 811 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PRSS47A8MTI9 375 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 EIF3FO00303 357 aaPredicted RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PLA2G6O60733 806 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SNX2O60749 519 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PRAMEF4O60810 478 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 CUTAO60888 179 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 ARIH2O95376 493 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 GATA4P43694 442 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SLC6A9P48067 706 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 CD69Q07108 199 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 POSTNQ15063 836 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TIGD5Q53EQ6 642 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 VASNQ6EMK4 673 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms