RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 DLATP10515 647 aaKnown RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 TNNT3P45378 269 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 MOGSQ13724 837 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 TARBP2Q15633 366 aaKnown RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 SV2AQ7L0J3 742 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 EPS8L1Q8TE68 723 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 AENQ8WTP8 325 aaKnown RBP22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 VIPAS39Q9H9C1 493 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 TMEM59LQ9UK28 342 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 STYXL1Q9Y6J8 313 aa22.79■■□□□ 1.24
CCDC88B-208ENST00000492980 ZNF233A6NK53 670 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 TGFB3P10600 412 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 CHRNB2P17787 502 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 SCP2P22307 547 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 RFC5P40937 340 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 RNASE9P60153 205 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 STRN3Q13033 797 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 GPS2Q13227 327 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 TTLL12Q14166 644 aaPredicted RBP22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 NOP9Q86U38 636 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 METTL13Q8N6R0 699 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 AFAP1L1Q8TED9 768 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 FGD4Q96M96 766 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 NT5C1BQ96P26 610 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 SELENOOQ9BVL4 669 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 ISCUQ9H1K1 167 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 ZCCHC17Q9NP64 241 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 GGPS1O95749 300 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 PRPF4BQ13523 1007 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 FAM160B1Q5W0V3 765 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 METTL7BQ6UX53 244 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 EEPD1Q7L9B9 569 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 DEPTORQ8TB45 409 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 ACTRT1Q8TDG2 376 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 HES6Q96HZ4 224 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 KIAA1586Q9HCI6 787 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 RBPJLQ9UBG7 517 aa22.78■■□□□ 1.24
CCDC88B-208ENST00000492980 FAM170AA1A519 330 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 LRRIQ4A6NIV6 560 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 SOCS7O14512 581 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 CYP26A1O43174 497 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 PIGRP01833 764 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 TNFRSF8P28908 595 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 STAT5BP51692 787 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 LY6KQ17RY6 165 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 USP50Q70EL3 339 aaPredicted RBP22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 PCDHB18PQ96TA0 734 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 NRBP2Q9NSY0 501 aa22.77■■□□□ 1.24
CCDC88B-208ENST00000492980 CEP104O60308 925 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 PGK2P07205 417 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 TCF7P36402 384 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 C15orf39Q6ZRI6 1047 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 PSPC1Q8WXF1 523 aaKnown RBP22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 SEPT1Q8WYJ6 367 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 OPTNQ96CV9 577 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 L3MBTL3Q96JM7 780 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 AMFRQ9UKV5 643 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 COG5Q9UP83 839 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 ARIH2O95376 493 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 FTLP02792 175 aaPredicted RBP22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 CLDN10P78369 228 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 PSMD6Q15008 389 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 Q3C1V9 767 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 SLC47A2Q86VL8 602 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 ZNF516Q92618 1163 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 GDAP1L1Q96MZ0 367 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 KRT12Q99456 494 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 HAPLN2Q9GZV7 340 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 ACBD3Q9H3P7 528 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 ACP6Q9NPH0 428 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 HPCAL4Q9UM19 191 aa22.76■■□□□ 1.23
CCDC88B-208ENST00000492980 K7ERI5 159 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 KIAA0391O15091 583 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 COPB2P35606 906 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 HADHBP55084 474 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 NLRP11P59045 1033 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 TAF3Q5VWG9 929 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 RHOT2Q8IXI1 618 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 ZC3H15Q8WU90 426 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 TATDN2Q93075 761 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 FAM84AQ96KN4 292 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 SYT17Q9BSW7 474 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 AGO2Q9UKV8 859 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 ZNFX1Q9P2E3 1918 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 RTN2O75298 545 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 EPHX2P34913 555 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 TNNC1P63316 161 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 TCEAL1Q15170 157 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 RASGEF1CQ8N431 466 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 SCFD2Q8WU76 684 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 ELMO3Q96BJ8 720 aa22.75■■□□□ 1.23
CCDC88B-208ENST00000492980 ZC3H4Q9UPT8 1303 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 DNAJC25-GNG10A0A024R161 153 aa22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 PGRMC1O00264 195 aaKnown RBP22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 EDN1P05305 212 aa22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 GLI1P08151 1106 aa22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 WNT7BP56706 349 aa22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 FMO1Q01740 532 aa22.74■■□□□ 1.23
CCDC88B-208ENST00000492980 GPAT2Q6NUI2 795 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms