RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 METP08581 1390 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 EFCAB6Q5THR3 1501 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 RPSAP08865 295 aaKnown RBP13.91□□□□□ -0.18
COL6A3-212ENST00000491769 KIZQ2M2Z5 673 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 QRICH1Q2TAL8 776 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 BHMTQ93088 406 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 CTTNBP2Q8WZ74 1663 aa13.91□□□□□ -0.18
COL6A3-212ENST00000491769 PDGFRBP09619 1106 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 STX19Q8N4C7 294 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PCDHA10Q9Y5I2 948 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SNX9Q9Y5X1 595 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 APOL1O14791 398 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 COASYQ13057 564 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PHKG1Q16816 387 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 TJAP1Q5JTD0 557 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 ZNF746Q6NUN9 644 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SP8Q8IXZ3 490 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 ZNF564Q8TBZ8 553 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 BTBD6Q96KE9 485 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SPATA16Q9BXB7 569 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PTPRTO14522 1441 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 NDUFB5O43674 189 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 CDH6P55285 790 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 TWF1Q12792 350 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PDAP1Q13442 181 aaKnown RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SNX31Q8N9S9 440 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 STN1Q9H668 368 aaKnown RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 ADA2Q9NZK5 511 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 CETPP11597 493 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 GNASQ5JWF2 1037 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 ARL6IP4Q66PJ3 421 aaKnown RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 TRIML2Q8N7C3 387 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PABPC5Q96DU9 382 aaKnown RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 TRIM33Q9UPN9 1127 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 PZPP20742 1482 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 DIAPH2O60879 1101 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 GFAPP14136 432 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 MMS22LQ6ZRQ5 1243 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SYT2Q8N9I0 419 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 AGR3Q8TD06 166 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 INTS2Q9H0H0 1204 aaKnown RBP13.9□□□□□ -0.18
COL6A3-212ENST00000491769 TMEM161AQ9NX61 479 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 EHD2Q9NZN4 543 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SLC25A13Q9UJS0 675 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 SHANK2Q9UPX8 1470 aa13.9□□□□□ -0.18
COL6A3-212ENST00000491769 HSPA1AP0DMV8 641 aaKnown RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 HSPA1BP0DMV9 641 aaKnown RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 FDX1P10109 184 aa13.9□□□□□ -0.19
COL6A3-212ENST00000491769 MCF2P10911 925 aa13.9□□□□□ -0.19
COL6A3-212ENST00000491769 MDM2Q00987 491 aaPredicted RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 CCDC15Q0P6D6 951 aa13.9□□□□□ -0.19
COL6A3-212ENST00000491769 PAN2Q504Q3 1202 aaKnown RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 TBC1D1Q86TI0 1168 aaPredicted RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 VMP1Q96GC9 406 aa13.9□□□□□ -0.19
COL6A3-212ENST00000491769 SCAF8Q9UPN6 1271 aaKnown RBP13.9□□□□□ -0.19
COL6A3-212ENST00000491769 NEDD4P46934 1319 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 KRT7P08729 469 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 ALDH7A1P49419 539 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 RGS7P49802 495 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 C11orf57Q6ZUT1 292 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 RNF168Q8IYW5 571 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 PHF21AQ96BD5 680 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 MAD2L2Q9UI95 211 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SEC31AO94979 1220 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 ZC3H18Q86VM9 953 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 EIF2AK1Q9BQI3 630 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SLC13A1Q9BZW2 595 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 FAM47DPA6NHR8 397 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 RALBP11234 206 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 YWHABP31946 246 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 PPP1R18Q6NYC8 613 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 FAM180AQ6UWF9 173 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 TMEM143Q96AN5 459 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SMARCAD1Q9H4L7 1026 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 HERC5Q9UII4 1024 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SNX5Q9Y5X3 404 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 KDM5AP29375 1690 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 MEFVO15553 781 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 HOXA7P31268 230 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 CDC42EP1Q00587 391 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 PDXDC1Q6P996 788 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 LINC00301Q8NCQ3 95 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 LATS2Q9NRM7 1088 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SNX24Q9Y343 169 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 SLC30A1Q9Y6M5 507 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 POLRMTO00411 1230 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 PEX19P40855 299 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 EFNA5P52803 228 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 E4F1Q66K89 784 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 ATPAF2Q8N5M1 289 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 ZNF280CQ8ND82 737 aa13.89□□□□□ -0.19
COL6A3-212ENST00000491769 STRBPQ96SI9 672 aaKnown RBP13.89□□□□□ -0.19
COL6A3-212ENST00000491769 CCDC78A2IDD5 438 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 MAPK13O15264 365 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PALMO75781 387 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 LMNAP02545 664 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 ZFXP17010 805 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 C6orf118Q5T5N4 469 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 CATSPER3Q86XQ3 398 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 AGAP3Q96P47 875 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms