RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 NKX2-4Q9H2Z4 354 aa11.91□□□□□ -0.5
VPS13D-210ENST00000489961 NXF3Q9H4D5 531 aaKnown RBP11.91□□□□□ -0.5
VPS13D-210ENST00000489961 RSAD1Q9HA92 442 aa11.91□□□□□ -0.5
VPS13D-210ENST00000489961 SLC28A3Q9HAS3 691 aa11.91□□□□□ -0.5
VPS13D-210ENST00000489961 PTPRHQ9HD43 1115 aa11.91□□□□□ -0.5
VPS13D-210ENST00000489961 SLC39A2Q9NP94 309 aa11.91□□□□□ -0.5
VPS13D-210ENST00000489961 YBX2Q9Y2T7 364 aaKnown RBP11.91□□□□□ -0.5
VPS13D-210ENST00000489961 TRIOBPQ9H2D6 2365 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 KIF20AO95235 890 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 CA3P07451 260 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 HARSP12081 509 aaKnown RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 MYOGP15173 224 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 MCL1Q07820 350 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 KYAT1Q16773 422 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 PAN2Q504Q3 1202 aaKnown RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 PPP2R2DQ66LE6 453 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 SLFN12LQ6IEE8 588 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 EPM2AIP1Q7L775 607 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 FIBCD1Q8N539 461 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 GLIS3Q8NEA6 775 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 ZNF507Q8TCN5 953 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 URGCPQ8TCY9 931 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 SP7Q8TDD2 431 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 HELQQ8TDG4 1101 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 ZBTB45Q96K62 511 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 GSDMAQ96QA5 445 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 CCDC94Q9BW85 323 aaPredicted RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 MRPL9Q9BYD2 267 aaKnown RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 RC3H2Q9HBD1 1191 aaKnown RBP11.9□□□□□ -0.5
VPS13D-210ENST00000489961 RNF19AQ9NV58 838 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 PARP2Q9UGN5 583 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 GIT1Q9Y2X7 761 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 HES2Q9Y543 173 aa11.9□□□□□ -0.5
VPS13D-210ENST00000489961 TMEM265A0A087WTH1 108 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 LCHNA4D1U4 455 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 SOX1O00570 391 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-210ENST00000489961 ABLIM1O14639 778 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 OFD1O75665 1012 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 AKAP5P24588 427 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 GRM5P41594 1212 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 GATMP50440 423 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 YARSP54577 528 aaKnown RBP11.89□□□□□ -0.51
VPS13D-210ENST00000489961 KCNA1Q09470 495 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 STK4Q13043 487 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 NOMO2Q5JPE7 1267 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 CLLU1OSQ5K130 101 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 AGMOQ6ZNB7 445 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 LRRC43Q8N309 656 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 LRCH3Q96II8 777 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 CASD1Q96PB1 797 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 MSTO1Q9BUK6 570 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 GTPBP4Q9BZE4 634 aaKnown RBP11.89□□□□□ -0.51
VPS13D-210ENST00000489961 TOPORSQ9NS56 1045 aaPredicted RBP11.89□□□□□ -0.51
VPS13D-210ENST00000489961 SNTG2Q9NY99 539 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 INPP5FQ9Y2H2 1132 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 GDAQ9Y2T3 454 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 PCDHA5Q9Y5H7 936 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 ZMYM2Q9UBW7 1377 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 RALGAPA2Q2PPJ7 1873 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 NLRC5Q86WI3 1866 aa11.89□□□□□ -0.51
VPS13D-210ENST00000489961 TDRD15B5MCY1 1934 aaKnown RBP11.88□□□□□ -0.51
VPS13D-210ENST00000489961 CITO14578 2027 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 A0A0B4J269 797 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 LINC01553A4QN01 128 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 MEIS3P2A8K0S8 358 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 ANKRD63C9JTQ0 380 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 OGTO15294 1046 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 RECQL4O94761 1208 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 MBD3O95983 291 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 MCM4P33991 863 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 MLH1P40692 756 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 OSTNP61366 133 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 RNASELQ05823 741 aaKnown RBP11.88□□□□□ -0.51
VPS13D-210ENST00000489961 BMT2Q1RMZ1 405 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 SPOUT1Q5T280 376 aaKnown RBP11.88□□□□□ -0.51
VPS13D-210ENST00000489961 ZNF697Q5TEC3 545 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 GPR153Q6NV75 609 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 SLC39A4Q6P5W5 647 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 NELFCDQ8IXH7 590 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 THNSL1Q8IYQ7 743 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 KIAA0895Q8NCT3 520 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 SPATA20Q8TB22 786 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 SCFD1Q8WVM8 642 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 POMGNT1Q8WZA1 660 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 ERCC4Q92889 916 aaPredicted RBP11.88□□□□□ -0.51
VPS13D-210ENST00000489961 SAMD11Q96NU1 681 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 ACAP3Q96P50 834 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 RPS6KC1Q96S38 1066 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 GBP3Q9H0R5 595 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 RNF39Q9H2S5 420 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 KANSL3Q9P2N6 904 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 RWDD3Q9Y3V2 267 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 STYXL1Q9Y6J8 313 aa11.88□□□□□ -0.51
VPS13D-210ENST00000489961 ARL5CA6NH57 179 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 KIAA0391O15091 583 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 INPPL1O15357 1258 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 CLTAP09496 248 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 GARTP22102 1010 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 SNRPFP62306 86 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 TAP1Q03518 808 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms