RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 DCLRE1AQ6PJP8 1040 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 FERMT3Q86UX7 667 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 RNF149Q8NC42 400 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 SLC7A3Q8WY07 619 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 FGF14Q92915 247 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 CPB2Q96IY4 423 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 CEP170P1Q96L14 293 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 AIFM3Q96NN9 605 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 DDX23Q9BUQ8 820 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 NXF3Q9H4D5 531 aaKnown RBP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 PLEKHA4Q9H4M7 779 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.15■□□□□ 0.34
MCF2L-228ENST00000487354 CACNG4Q9UBN1 327 aa17.15■□□□□ 0.34
MCF2L-228ENST00000487354 ZBTB39O15060 712 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 HSPA4P34932 840 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 RFC5P40937 340 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 PUM1Q14671 1186 aaKnown RBP eCLIP17.14■□□□□ 0.33
MCF2L-228ENST00000487354 FUT10Q6P4F1 479 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 PARM1Q6UWI2 310 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 GLYCTKQ8IVS8 523 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 BLIDQ8IZY5 108 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 CNNM3Q8NE01 707 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 RUBCNQ92622 972 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 HAS1Q92839 578 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 C22orf23Q9BZE7 217 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 UBN1Q9NPG3 1134 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 FNIP2Q9P278 1114 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 DDX25Q9UHL0 483 aaKnown RBP17.14■□□□□ 0.33
MCF2L-228ENST00000487354 DPP7Q9UHL4 492 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 ZFHX4Q86UP3 3567 aa17.14■□□□□ 0.33
MCF2L-228ENST00000487354 GAS2O43903 313 aaKnown RBP17.13■□□□□ 0.33
MCF2L-228ENST00000487354 ZMYND10O75800 440 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 RFX1P22670 979 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 PTENP60484 403 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 GPC5P78333 572 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 MBTD1Q05BQ5 628 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 SPIRE1Q08AE8 756 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 INF2Q27J81 1249 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 RTP2Q5QGT7 225 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 ZC3H14Q6PJT7 736 aaKnown RBP17.13■□□□□ 0.33
MCF2L-228ENST00000487354 BLOC1S2Q6QNY1 142 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 IFNLR1Q8IU57 520 aaPredicted RBP17.13■□□□□ 0.33
MCF2L-228ENST00000487354 GPR65Q8IYL9 337 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 RABGGTAQ92696 567 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 LXNQ9BS40 222 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 FBXW11Q9UKB1 542 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 MTF2Q9Y483 593 aaPredicted RBP17.13■□□□□ 0.33
MCF2L-228ENST00000487354 PPME1Q9Y570 386 aa17.13■□□□□ 0.33
MCF2L-228ENST00000487354 TRIP11Q15643 1979 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 P4HBP07237 508 aaKnown RBP17.12■□□□□ 0.33
MCF2L-228ENST00000487354 YWHABP31946 246 aaKnown RBP17.12■□□□□ 0.33
MCF2L-228ENST00000487354 NTHL1P78549 312 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 TOB2Q14106 344 aaPredicted RBP17.12■□□□□ 0.33
MCF2L-228ENST00000487354 ELMSAN1Q6PJG2 1045 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 PRSS55Q6UWB4 352 aaPredicted RBP17.12■□□□□ 0.33
MCF2L-228ENST00000487354 C4orf19Q8IY42 314 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 ASAP3Q8TDY4 903 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 CCDC51Q96ER9 411 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 PAAF1Q9BRP4 392 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 CSRNP2Q9H175 543 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 PIDD1Q9HB75 910 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.12■□□□□ 0.33
MCF2L-228ENST00000487354 RGL1Q9NZL6 768 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 ADAM28Q9UKQ2 775 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 ACACBO00763 2458 aa17.12■□□□□ 0.33
MCF2L-228ENST00000487354 B4GALT5O43286 388 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 CDC45O75419 566 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 ERLIN2O94905 339 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 ARF4P18085 180 aaPredicted RBP17.11■□□□□ 0.33
MCF2L-228ENST00000487354 AXLP30530 894 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 CAPSQ13938 189 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 USP41Q3LFD5 358 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 NOTUMQ6P988 496 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 APOL6Q9BWW8 343 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 GIT1Q9Y2X7 761 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 ZMYM2Q9UBW7 1377 aa17.11■□□□□ 0.33
MCF2L-228ENST00000487354 SHISA7A6NL88 538 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 ASAP2O43150 1006 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 FSHRP23945 695 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 AKAP5P24588 427 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 SNW1Q13573 536 aaKnown RBP17.1■□□□□ 0.33
MCF2L-228ENST00000487354 PCBP1Q15365 356 aaKnown RBP eCLIP17.1■□□□□ 0.33
MCF2L-228ENST00000487354 RSPO4Q2I0M5 234 aaPredicted RBP17.1■□□□□ 0.33
MCF2L-228ENST00000487354 ZNF528Q3MIS6 628 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 GRASPQ7Z6J2 395 aaPredicted RBP17.1■□□□□ 0.33
MCF2L-228ENST00000487354 CDR2LQ86X02 465 aaPredicted RBP17.1■□□□□ 0.33
MCF2L-228ENST00000487354 TCP11Q8WWU5 503 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 FAM20AQ96MK3 541 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 MTRQ99707 1265 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 HINFPQ9BQA5 517 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 CLSTN3Q9BQT9 956 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 COLEC11Q9BWP8 271 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 CDH7Q9ULB5 785 aa17.1■□□□□ 0.33
MCF2L-228ENST00000487354 KANSL1LA0AUZ9 987 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 ADAM12O43184 909 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 DEXIO95424 95 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 GRIK3Q13003 919 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 CTTNQ14247 550 aaKnown RBP17.09■□□□□ 0.33
MCF2L-228ENST00000487354 EPHA7Q15375 998 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 MLF2Q15773 248 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms