RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SBK1Q52WX2 424 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 NUDCD3Q8IVD9 361 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 MYO3AQ8NEV4 1616 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 CYP26A1O43174 497 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 STK4Q13043 487 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 TMED1Q13445 227 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 CCT8L2Q96SF2 557 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 IRAK4Q9NWZ3 460 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SENP1Q9P0U3 644 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 ZBBXA8MT70 800 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SNRNP48Q6IEG0 339 aaKnown RBP17.45■□□□□ 0.38
COL7A1-210ENST00000487017 USP49Q70CQ1 688 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 LCA5Q86VQ0 697 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SCG3Q8WXD2 468 aaKnown RBP17.45■□□□□ 0.38
COL7A1-210ENST00000487017 MRPL40Q9NQ50 206 aaKnown RBP17.45■□□□□ 0.38
COL7A1-210ENST00000487017 RBM12Q9NTZ6 932 aaKnown RBP17.45■□□□□ 0.38
COL7A1-210ENST00000487017 APEX2Q9UBZ4 518 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 FBXO40Q9UH90 709 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 TNS3Q68CZ2 1445 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 MMP10P09238 476 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 ARSEP51690 589 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 RAD23BP54727 409 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 SUN2Q9UH99 717 aa17.45■□□□□ 0.38
COL7A1-210ENST00000487017 GALCP54803 685 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 HEATR6Q6AI08 1181 aaKnown RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 KRT27Q7Z3Y8 459 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 TRIM51Q9BSJ1 452 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 C2orf40Q9H1Z8 148 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 RNF146Q9NTX7 359 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 ARL2BPQ9Y2Y0 163 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 TAF6LQ9Y6J9 622 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 PDS5AQ29RF7 1337 aaKnown RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 TCP11X1B4DZS4 312 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 UCHL3P15374 230 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 EEF1DP29692 281 aaKnown RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 ZBTB41Q5SVQ8 909 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 CDKL3Q8IVW4 592 aaPredicted RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 CFAP69A5D8W1 941 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 ASAP2O43150 1006 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 PSD3Q9NYI0 1048 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 RBAKQ9NYW8 714 aaPredicted RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 SLC26A4O43511 780 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 CHN1P15882 459 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 SCP2P22307 547 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 EPHB1P54762 984 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 BCAR1P56945 870 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 YIPF3Q9GZM5 350 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 TOPORSQ9NS56 1045 aaPredicted RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 NDE1Q9NXR1 346 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 HOXC10Q9NYD6 342 aa17.44■□□□□ 0.38
COL7A1-210ENST00000487017 SETD1BQ9UPS6 1966 aaKnown RBP17.44■□□□□ 0.38
COL7A1-210ENST00000487017 BNIP3LO60238 219 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 IREB2P48200 963 aaKnown RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 AP3M2P53677 418 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 FAM167BQ9BTA0 163 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 FAM49AQ9H0Q0 323 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 GTSE1Q9NYZ3 720 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 MYMKA6NI61 221 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 CCDC22O60826 627 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 NAB2Q15742 525 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 AGBL2Q5U5Z8 902 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 ALKBH8Q96BT7 664 aaKnown RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 BTBD6Q96KE9 485 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 ZBTB17Q13105 803 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 ZC3H15Q8WU90 426 aaKnown RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 MRPL4Q9BYD3 311 aaKnown RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 DLC1Q96QB1 1528 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 DIAPH2O60879 1101 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 TTLL6Q8N841 843 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 UVRAGQ9P2Y5 699 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 MCF2P10911 925 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 HIF1AQ16665 826 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 SPATA17Q96L03 361 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 SLC13A1Q9BZW2 595 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 EPB41L4AQ9HCS5 686 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 RGL1Q9NZL6 768 aa17.43■□□□□ 0.38
COL7A1-210ENST00000487017 AGO2Q9UKV8 859 aaKnown RBP17.43■□□□□ 0.38
COL7A1-210ENST00000487017 RMDN2Q96LZ7 410 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 FSD1LQ9BXM9 530 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 TRPV6Q9H1D0 765 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 TRABDQ9H4I3 376 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 CSF1RP07333 972 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 TEDDM1Q5T9Z0 273 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 RASSF3Q86WH2 238 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 RIN2Q8WYP3 895 aaPredicted RBP17.42■□□□□ 0.38
COL7A1-210ENST00000487017 LRFN2Q9ULH4 789 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 FMO5P49326 533 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 TTC39CQ8N584 583 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 REEP2Q9BRK0 252 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 DONSONQ9NYP3 566 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 CEP55Q53EZ4 464 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 MMGT1Q8N4V1 131 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 ZBTB18Q99592 522 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 OSBPL1AQ9BXW6 950 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 SENP2Q9HC62 589 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 MTMR4Q9NYA4 1195 aa17.42■□□□□ 0.38
COL7A1-210ENST00000487017 PPP1R3GB7ZBB8 358 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 STXBP3O00186 592 aa17.41■□□□□ 0.38
COL7A1-210ENST00000487017 PPARGP37231 505 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-210ENST00000487017 EDRF1Q3B7T1 1238 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms