RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 YWHAGP61981 247 aaKnown RBP eCLIP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TAF11Q15544 211 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 CDO1Q16878 200 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 FAM133BQ5BKY9 247 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 KCTD6Q8NC69 237 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 GMCL1P1Q8NEA9 526 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 OR6J1Q8NGC5 347 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 HVCN1Q96D96 273 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 MOV10L1Q9BXT6 1211 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 DNAJC17Q9NVM6 304 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SSU72P8A0A1W2PR75 194 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 SLCO1A2P46721 670 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 C15orf52Q6ZUT6 534 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TBC1D1Q86TI0 1168 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 ZNF564Q8TBZ8 553 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 TIPINQ9BVW5 301 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 NUP85Q9BW27 656 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 IDI2Q9BXS1 227 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 DDX47Q9H0S4 455 aaKnown RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 ZWILCHQ9H900 591 aa11.76□□□□□ -0.53
HDAC6-228ENST00000486227 GBA2Q9HCG7 927 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-228ENST00000486227 GAKO14976 1311 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 NUDT12Q9BQG2 462 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 APEX2Q9UBZ4 518 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 SNX12Q9UMY4 172 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 TFR2Q9UP52 801 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 AKAP12Q02952 1782 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 NFIBO00712 420 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 DYNC1LI2O43237 492 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 PRPSAP2O60256 369 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 PSMA2P25787 234 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ANXA13P27216 316 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 SSTR3P32745 418 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ADCY1Q08828 1119 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 SNRNP35Q16560 246 aaKnown RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 MOXD1Q6UVY6 613 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ERO1BQ86YB8 467 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 CYP2W1Q8TAV3 490 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 GCNAQ96QF7 691 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ERGIC2Q96RQ1 377 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 GCOM2Q9BZD3 368 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 IFT122Q9HBG6 1241 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 SLC38A10Q9HBR0 1119 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 EVI5O60447 810 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 TROVE2P10155 538 aaKnown RBP eCLIP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 GNA15P30679 374 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 RAB3IL1Q8TBN0 382 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ZNF473Q8WTR7 871 aaKnown RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 RFFLQ8WZ73 363 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 AGPAT1Q99943 283 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 STK33Q9BYT3 514 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 PRDM5Q9NQX1 630 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-228ENST00000486227 RAB21Q9UL25 225 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 MCF2LO15068 1137 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 ZNF185O15231 689 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 CIITAP33076 1130 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 PPP2R2AP63151 447 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 AKT1S1Q96B36 256 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 SLC12A6Q9UHW9 1150 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 PCDHAC2Q9Y5I4 1007 aa11.75□□□□□ -0.53
HDAC6-228ENST00000486227 MAFGO15525 162 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 DDNO94850 711 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 ZNF18P17022 549 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 TBXAS1P24557 533 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 MDH1P40925 334 aaKnown RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 EFNA5P52803 228 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 BACE1P56817 501 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 GUCY1A3Q02108 690 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 DUOXA2Q1HG44 320 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 ANKRD20A3Q5VUR7 823 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 CCNYQ8ND76 341 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 ARMC2Q8NEN0 867 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 CCT8L2Q96SF2 557 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 SEMA6BQ9H3T3 888 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 TULP2O00295 520 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 WNT10BO00744 389 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 BASP1P80723 227 aaKnown RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 FAM83AQ86UY5 434 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 URGCPQ8TCY9 931 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 LRRC1Q9BTT6 524 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 KIFC3Q9BVG8 833 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 SUCLA2Q9P2R7 463 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 RGPD8O14715 1765 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 SYNGAP1Q96PV0 1343 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 PRKCBP05771 671 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 GALCP54803 685 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 EMC2Q15006 297 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 DARS2Q6PI48 645 aaKnown RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 EIF3DO15371 548 aaKnown RBP eCLIP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 SUGP1Q8IWZ8 645 aaKnown RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 BBS5Q8N3I7 341 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 RNF25Q96BH1 459 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-228ENST00000486227 GPRC5CQ9NQ84 441 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 PPP1R9AQ9ULJ8 1098 aa11.74□□□□□ -0.53
HDAC6-228ENST00000486227 GRID2IPA4D2P6 1211 aa11.73□□□□□ -0.53
HDAC6-228ENST00000486227 CFAP73A6NFT4 308 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms