RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM43BQ6ZT52 329 aaPredicted RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 RTN4RL1Q86UN2 441 aaPredicted RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 C12orf56Q8IXR9 622 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 NOC3LQ8WTT2 800 aaKnown RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 VWCEQ96DN2 955 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 MED15Q96RN5 788 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 LBHD1Q9BQE6 289 aaPredicted RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 MSTO1Q9BUK6 570 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 EIF2AQ9BY44 585 aaKnown RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 TRIM6Q9C030 488 aaPredicted RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 HAPLN2Q9GZV7 340 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 CDT1Q9H211 546 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 IL23AQ9NPF7 189 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 AGO2Q9UKV8 859 aaKnown RBP13.37□□□□□ -0.27
SDC1-206ENST00000482879 TTC3P53804 2025 aa13.37□□□□□ -0.27
SDC1-206ENST00000482879 PDE4DIPQ5VU43 2346 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 ENPP3O14638 875 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 CAVIN2O95810 425 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 PFKMP08237 780 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 ZNF165P49910 485 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 FKBP3Q00688 224 aaKnown RBP13.36□□□□□ -0.27
SDC1-206ENST00000482879 IKBKEQ14164 716 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 MYBPC2Q14324 1141 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 NFIL3Q16649 462 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 FOXR2Q6PJQ5 311 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 SLC9A9Q8IVB4 645 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 THNSL1Q8IYQ7 743 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 XXYLT1Q8NBI6 393 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 ENOX1Q8TC92 643 aaKnown RBP13.36□□□□□ -0.27
SDC1-206ENST00000482879 DUSP9Q99956 384 aaKnown RBP13.36□□□□□ -0.27
SDC1-206ENST00000482879 RGS18Q9NS28 235 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 DMAC2Q9NW81 257 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 HSPBP1Q9NZL4 362 aa13.36□□□□□ -0.27
SDC1-206ENST00000482879 GOLGA8IPA6NC78 632 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 GOLGA8JA6NMD2 632 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 KIAA0391O15091 583 aaKnown RBP13.35□□□□□ -0.27
SDC1-206ENST00000482879 CETN3O15182 167 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 OGTO15294 1046 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 EXOC3O60645 756 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 LDHAP00338 332 aaKnown RBP13.35□□□□□ -0.27
SDC1-206ENST00000482879 ACTN1P12814 892 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 IBSPP21815 317 aaPredicted RBP13.35□□□□□ -0.27
SDC1-206ENST00000482879 NR2F2P24468 414 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 RGS19P49795 217 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 SPATA1Q5VX52 437 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 CEP135Q66GS9 1140 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 SLC24A5Q71RS6 500 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 GPD1LQ8N335 351 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 CSGALNACT2Q8N6G5 542 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 ZSWIM2Q8NEG5 633 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 LINC01599Q8WXQ3 324 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 SAAL1Q96ER3 474 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 EEF2KMTQ96G04 330 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 BPIFA3Q9BQP9 254 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 SRRTQ9BXP5 876 aaKnown RBP13.35□□□□□ -0.27
SDC1-206ENST00000482879 TSPYL2Q9H2G4 693 aaPredicted RBP13.35□□□□□ -0.27
SDC1-206ENST00000482879 C1orf112Q9NSG2 853 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 FAM105AQ9NUU6 356 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 PCDHB2Q9Y5E7 798 aa13.35□□□□□ -0.27
SDC1-206ENST00000482879 A0A0U1RQF3 1178 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ABHD14A-ACY1A0A1B0GW23 586 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 SMTNL1A8MU46 457 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 C9IYK1 514 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 EXTL3O43909 919 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ZNF623O75123 536 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 FGFR1OPO95684 399 aaKnown RBP13.34□□□□□ -0.27
SDC1-206ENST00000482879 FGBP02675 491 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 STAG3L1P0CL83 205 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 SKIP12755 728 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ACOT2P49753 483 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 RAB27AP51159 221 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 OSTNP61366 133 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 MYL5Q02045 173 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 HSP90AA2PQ14568 343 aaPredicted RBP13.34□□□□□ -0.27
SDC1-206ENST00000482879 KYAT1Q16773 422 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 SEZ6Q53EL9 994 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ZBTB41Q5SVQ8 909 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ZNF365Q70YC5 407 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 C16orf59Q7L2K0 433 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ZC3H3Q8IXZ2 948 aaKnown RBP13.34□□□□□ -0.27
SDC1-206ENST00000482879 AOPEPQ8N6M6 819 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 CEP120Q8N960 986 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 RDH13Q8NBN7 331 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 TMEM174Q8WUU8 243 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 CEP63Q96MT8 703 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 FAM213AQ9BRX8 229 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 CCDC94Q9BW85 323 aaPredicted RBP13.34□□□□□ -0.27
SDC1-206ENST00000482879 APOL6Q9BWW8 343 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 CBX8Q9HC52 389 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 KIAA1586Q9HCI6 787 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 FRMD4BQ9Y2L6 1034 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 HES2Q9Y543 173 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 IPPQ9Y573 584 aa13.34□□□□□ -0.27
SDC1-206ENST00000482879 ANK1P16157 1881 aa13.33□□□□□ -0.27
SDC1-206ENST00000482879 ZNF233A6NK53 670 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 BECN2A8MW95 431 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 TULP1O00294 542 aaPredicted RBP13.33□□□□□ -0.28
SDC1-206ENST00000482879 EFCAB14O75071 495 aa13.33□□□□□ -0.28
SDC1-206ENST00000482879 CLTAP09496 248 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms