RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 HOXD12P35452 270 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 CHKAP35790 457 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 STAT5AP42229 794 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 ABCB5Q2M3G0 1257 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 MINDY4Q4G0A6 757 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 ARHGAP29Q52LW3 1261 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 FBLN7Q53RD9 439 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 VPS53Q5VIR6 699 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 SYDE2Q5VT97 1194 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 VASNQ6EMK4 673 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 HIBCHQ6NVY1 386 aaPredicted RBP4.77□□□□□ -1.65
VPS41-212ENST00000482217 ESRP1Q6NXG1 681 aaKnown RBP4.77□□□□□ -1.65
VPS41-212ENST00000482217 UNC5DQ6UXZ4 953 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 FRMD7Q6ZUT3 714 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 MCM10Q7L590 875 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 CATIPQ7Z7H3 387 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 B3GNT8Q7Z7M8 397 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 SAMD14Q8IZD0 417 aaPredicted RBP4.77□□□□□ -1.65
VPS41-212ENST00000482217 CLRN3Q8NCR9 226 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 ACRBPQ8NEB7 543 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 NSUN6Q8TEA1 469 aaKnown RBP4.77□□□□□ -1.65
VPS41-212ENST00000482217 CLIP3Q96DZ5 547 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 GBP4Q96PP9 640 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 TMEM209Q96SK2 561 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 CRB3Q9BUF7 120 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 C22orf23Q9BZE7 217 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 DCAF16Q9NXF7 216 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 BTBD7Q9P203 1132 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 ARHGAP28Q9P2N2 729 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 GIMAP2Q9UG22 337 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS41-212ENST00000482217 TPCN1Q9ULQ1 816 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 IRAK3Q9Y616 596 aa4.77□□□□□ -1.65
VPS41-212ENST00000482217 FAM170AA1A519 330 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TSPY2A6NKD2 308 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 ZNF839A8K0R7 811 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 H0Y3Z8 333 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 IPO5O00410 1097 aaKnown RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 PRKD3O94806 890 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 CNOT4O95628 575 aaKnown RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 IL33O95760 270 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TPM2P07951 284 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TSPY3P0CV98 308 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TSPY8P0CW00 308 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 ATF2P15336 505 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 PTGS1P23219 599 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TNNT2P45379 298 aaPredicted RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 CCT5P48643 541 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 USP14P54578 494 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 HSD17B7P56937 341 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TSPY1Q01534 308 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 PTPN21Q16825 1174 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 SLC45A4Q5BKX6 768 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 CCDC158Q5M9N0 1113 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 TTLL5Q6EMB2 1281 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 RTN4RL1Q86UN2 441 aaPredicted RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 ARHGEF25Q86VW2 580 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 PROSER1Q86XN7 944 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 IGDCC3Q8IVU1 814 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 CBARPQ8N350 705 aaPredicted RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 NAXEQ8NCW5 288 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 HIPK4Q8NE63 616 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 IGDCC4Q8TDY8 1250 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 NUP133Q8WUM0 1156 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 ATP6V1E2Q96A05 226 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 FOXRED1Q96CU9 486 aaPredicted RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 TNIP3Q96KP6 325 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 WRNIP1Q96S55 665 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 FOXB1Q99853 325 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 ZDHHC5Q9C0B5 715 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 DLL4Q9NR61 685 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 RASSF1Q9NS23 344 aa4.76□□□□□ -1.65
VPS41-212ENST00000482217 SAP30BPQ9UHR5 308 aaKnown RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 XPO7Q9UIA9 1087 aaKnown RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 NOC2LQ9Y3T9 749 aaKnown RBP4.76□□□□□ -1.65
VPS41-212ENST00000482217 UBA6A0AVT1 1052 aaPredicted RBP4.75□□□□□ -1.65
VPS41-212ENST00000482217 TRIM64A6NGJ6 449 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 TRIM64BA6NI03 449 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 PES1O00541 588 aaKnown RBP4.75□□□□□ -1.65
VPS41-212ENST00000482217 PLOD3O60568 738 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 TLR5O60602 858 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 TMEM127O75204 238 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 FBXO21O94952 628 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 MYBP10242 640 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 MRE11P49959 708 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 AK2P54819 239 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 PRKG2Q13237 762 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 DCTN1Q14203 1278 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 RILPL1Q5EBL4 403 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 TTC38Q5R3I4 469 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 LCNL1Q6ZST4 164 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 PHYKPLQ8IUZ5 450 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 C7orf31Q8N865 590 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 DTX3Q8N9I9 347 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 SMARCC2Q8TAQ2 1214 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 CALML6Q8TD86 181 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 ZBTB10Q96DT7 871 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 AHCYL2Q96HN2 611 aaKnown RBP4.75□□□□□ -1.65
VPS41-212ENST00000482217 MAML3Q96JK9 1138 aa4.75□□□□□ -1.65
VPS41-212ENST00000482217 CFAP53Q96M91 514 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms