RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 RAB30Q15771 203 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 NFIL3Q16649 462 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 KNOP1Q1ED39 458 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 KLHL40Q2TBA0 621 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 LRIT3Q3SXY7 679 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 FOXR2Q6PJQ5 311 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 CHRDL2Q6WN34 429 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 HS2ST1Q7LGA3 356 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 TAS1R3Q7RTX0 852 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 ZNF598Q86UK7 904 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 C12orf56Q8IXR9 622 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 RAD9AQ99638 391 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 KIFC3Q9BVG8 833 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 CCDC94Q9BW85 323 aaPredicted RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 TARS2Q9BW92 718 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 OSBPL7Q9BZF2 842 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 PDZD7Q9H5P4 517 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 PLEKHA5Q9HAU0 1116 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 SLC39A2Q9NP94 309 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 RRAGDQ9NQL2 400 aaPredicted RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 TOPORSQ9NS56 1045 aaPredicted RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 TBC1D7Q9P0N9 293 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 DACH1Q9UI36 760 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 RWDD3Q9Y3V2 267 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 PCDHB2Q9Y5E7 798 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 RALGAPA2Q2PPJ7 1873 aa9.02□□□□□ -0.96
USP54-212ENST00000480210 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 OGTO15294 1046 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 MGEA5O60502 916 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 DGKIO75912 1065 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 PRPF6O94906 941 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 GJB5O95377 273 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 MYBP10242 640 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 RPL13P26373 211 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 CASP1P29466 404 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 GRM5P41594 1212 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 MATR3P43243 847 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP54-212ENST00000480210 YARSP54577 528 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 HTRA4P83105 476 aaPredicted RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 SMAD3P84022 425 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 STK4Q13043 487 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 NOLC1Q14978 699 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP54-212ENST00000480210 SURF1Q15526 300 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 ZNF568Q3ZCX4 644 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 ZC2HC1CQ53FD0 456 aaPredicted RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 UBXN11Q5T124 520 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 CCDC183Q5T5S1 534 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP54-212ENST00000480210 RBM43Q6ZSC3 357 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 SLC9A9Q8IVB4 645 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 HERC6Q8IVU3 1022 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 CMTR2Q8IYT2 770 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 ABI1Q8IZP0 508 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 CRIPAKQ8N1N5 446 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 GPT2Q8TD30 523 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 SCFD1Q8WVM8 642 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 DHTKD1Q96HY7 919 aaPredicted RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 CPB2Q96IY4 423 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 SAMD11Q96NU1 681 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 ACAP3Q96P50 834 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 ZBED2Q9BTP6 218 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 MRPL9Q9BYD2 267 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 TMEM117Q9H0C3 514 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 TYW1Q9NV66 732 aaKnown RBP9.02□□□□□ -0.97
USP54-212ENST00000480210 MSRAQ9UJ68 235 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 TRAF3IP3Q9Y228 551 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 IPPQ9Y573 584 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 PCDHA11Q9Y5I1 949 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 NLRC5Q86WI3 1866 aa9.02□□□□□ -0.97
USP54-212ENST00000480210 COL4A6Q14031 1691 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 TMEM265A0A087WTH1 108 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 A0A0B4J269 797 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 BICDL2A1A5D9 508 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 PSMA7O14818 248 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 INPPL1O15357 1258 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 B4GALT5O43286 388 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 XPOTO43592 962 aaKnown RBP9.01□□□□□ -0.97
USP54-212ENST00000480210 NPTXRO95502 500 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 CLTAP09496 248 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 ANK1P16157 1881 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 ENPEPQ07075 957 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 MORC3Q14149 939 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 C9orf50Q5SZB4 431 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 ARMCX5Q6P1M9 558 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 GLB1LQ6UWU2 654 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 NT5DC4Q86YG4 428 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 MLKLQ8NB16 471 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 KIAA0895Q8NCT3 520 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 URGCPQ8TCY9 931 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 LINC01599Q8WXQ3 324 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 POMGNT1Q8WZA1 660 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 ZNF689Q96CS4 500 aaPredicted RBP9.01□□□□□ -0.97
USP54-212ENST00000480210 TSG101Q99816 390 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 CDT1Q9H211 546 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 RSAD1Q9HA92 442 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 AAASQ9NRG9 546 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 CXXC1Q9P0U4 656 aaPredicted RBP9.01□□□□□ -0.97
USP54-212ENST00000480210 STK39Q9UEW8 545 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 MAN1B1Q9UKM7 699 aa9.01□□□□□ -0.97
USP54-212ENST00000480210 AGO2Q9UKV8 859 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms