RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 RESTQ13127 1097 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 CABP7Q86V35 215 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 GJD3Q8N144 294 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 KIFC3Q9BVG8 833 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 VN1R3Q9BXE9 311 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 ARHGAP28Q9P2N2 729 aa23.98■■□□□ 1.43
COL9A3-211ENST00000477612 BARX2Q9UMQ3 279 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-211ENST00000477612 K7ERI5 159 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 PEX3P56589 373 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 RBM10P98175 930 aaKnown RBP23.97■■□□□ 1.43
COL9A3-211ENST00000477612 ZP2Q05996 745 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 PTPAQ15257 358 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 CLUL1Q15846 466 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 NT5DC1Q5TFE4 455 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 PHLPP2Q6ZVD8 1323 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 ADHFE1Q8IWW8 467 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 RNF168Q8IYW5 571 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-211ENST00000477612 ADPGKQ9BRR6 497 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 APOL6Q9BWW8 343 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 MARCH5Q9NX47 278 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 KCNG1Q9UIX4 513 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 MYH15Q9Y2K3 1946 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 RBM19Q9Y4C8 960 aaKnown RBP23.97■■□□□ 1.43
COL9A3-211ENST00000477612 GTF3C3Q9Y5Q9 886 aa23.97■■□□□ 1.43
COL9A3-211ENST00000477612 SRGAP2BP0DMP2 458 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 UBA7P41226 1012 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 GRIK3Q13003 919 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 EEF1DP3Q658K8 133 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 CDK5RAP3Q96JB5 506 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 TNFSF13BQ9Y275 285 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 USP20Q9Y2K6 914 aa23.96■■□□□ 1.43
COL9A3-211ENST00000477612 MORC2Q9Y6X9 1032 aaPredicted RBP23.96■■□□□ 1.43
COL9A3-211ENST00000477612 CITO14578 2027 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 LILRB3O75022 631 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 CLASP2O75122 1294 aaKnown RBP23.95■■□□□ 1.42
COL9A3-211ENST00000477612 PLA2G4BP0C869 781 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 GRIN1Q05586 938 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 DMP1Q13316 513 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-211ENST00000477612 ZRSR1Q15695 479 aaKnown RBP23.95■■□□□ 1.42
COL9A3-211ENST00000477612 DCAF4L1Q3SXM0 396 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 ANKRD54Q6NXT1 300 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 SPIRE2Q8WWL2 714 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 KCNN1Q92952 543 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 CALML4Q96GE6 196 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 S1PR5Q9H228 398 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 KMT5AQ9NQR1 393 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 SNTG2Q9NY99 539 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 PARP2Q9UGN5 583 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 MTMR6Q9Y217 621 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 HCFC2Q9Y5Z7 792 aa23.95■■□□□ 1.42
COL9A3-211ENST00000477612 CCDC169A6NNP5 214 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 HOXB8P17481 243 aaPredicted RBP23.94■■□□□ 1.42
COL9A3-211ENST00000477612 ATF7IP2Q5U623 682 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 TAS1R3Q7RTX0 852 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 SUSD6Q92537 303 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 CASP10Q92851 521 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 PLIN2Q99541 437 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 ACO2Q99798 780 aaKnown RBP23.94■■□□□ 1.42
COL9A3-211ENST00000477612 CCSER1Q9C0I3 900 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 PTPRHQ9HD43 1115 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 KLK14Q9P0G3 267 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 CLIC4Q9Y696 253 aa23.94■■□□□ 1.42
COL9A3-211ENST00000477612 MTCL1Q9Y4B5 1905 aaKnown RBP23.93■■□□□ 1.42
COL9A3-211ENST00000477612 NR1I2O75469 434 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 SOD2P04179 222 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 PLS3P13797 630 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 OR1G1P47890 313 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 PTPN14Q15678 1187 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 TMEM132AQ24JP5 1023 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 ARSHQ5FYA8 562 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 SYCE2Q6PIF2 218 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 LRRC15Q8TF66 581 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 KHSRPQ92945 711 aaKnown RBP eCLIP23.93■■□□□ 1.42
COL9A3-211ENST00000477612 ZSCAN16Q9H4T2 348 aaPredicted RBP23.93■■□□□ 1.42
COL9A3-211ENST00000477612 BLOC1S4Q9NUP1 217 aa23.93■■□□□ 1.42
COL9A3-211ENST00000477612 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.92■■□□□ 1.42
COL9A3-211ENST00000477612 SFI1A8K8P3 1242 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 PI4K2BG5E9Z4 385 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 PTGESO14684 152 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 RECQL4O94761 1208 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 LIG1P18858 919 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 NAB2Q15742 525 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 AUTS2Q8WXX7 1259 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 RPS6KC1Q96S38 1066 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 POP1Q99575 1024 aaKnown RBP23.92■■□□□ 1.42
COL9A3-211ENST00000477612 HERC2P3Q9BVR0 1158 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 COLEC11Q9BWP8 271 aa23.92■■□□□ 1.42
COL9A3-211ENST00000477612 PRG3Q9Y2Y8 225 aaPredicted RBP23.92■■□□□ 1.42
COL9A3-211ENST00000477612 USP15Q9Y4E8 981 aaPredicted RBP23.92■■□□□ 1.42
COL9A3-211ENST00000477612 SRPRBQ9Y5M8 271 aaKnown RBP23.92■■□□□ 1.42
COL9A3-211ENST00000477612 STX6O43752 255 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 SSBP05455 408 aaKnown RBP eCLIP23.91■■□□□ 1.42
COL9A3-211ENST00000477612 PROZP22891 400 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 APBB1IPQ7Z5R6 666 aaPredicted RBP23.91■■□□□ 1.42
COL9A3-211ENST00000477612 GPR65Q8IYL9 337 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 SLC22A17Q8WUG5 538 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 MRPL4Q9BYD3 311 aaKnown RBP23.91■■□□□ 1.42
COL9A3-211ENST00000477612 ODF2LQ9ULJ1 636 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 SSX2IPQ9Y2D8 614 aa23.91■■□□□ 1.42
COL9A3-211ENST00000477612 PDCD11Q14690 1871 aaKnown RBP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms