RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 ZNF677Q86XU0 584 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ARMC2Q8NEN0 867 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 NSMCE1Q8WV22 266 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 GLG1Q92896 1179 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 C18orf8Q96DM3 657 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TBC1D31Q96DN5 1066 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TMEM237Q96Q45 408 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MRIQ9BWK5 157 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TEKT3Q9BXF9 490 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ADAM7Q9H2U9 754 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 POLD4Q9HCU8 107 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 UBE2TQ9NPD8 197 aaPredicted RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 ARHGEF3Q9NR81 526 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 GREB1LQ9C091 1923 aaPredicted RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 DCDC2CA8MYV0 355 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TCP11X1B4DZS4 312 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 C6orf229H3BNL8 230 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MEIS2O14770 477 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 FSCN2O14926 492 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MSH4O15457 936 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 GAS7O60861 476 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 UBOX5O94941 541 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 GTF2H1P32780 548 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 SHMT1P34896 483 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 CYP2J2P51589 502 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 VAMP7P51809 220 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 PTP4A2Q12974 167 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 MTFR1Q15390 333 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 TTBK2Q6IQ55 1244 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 FAM228AQ86W67 206 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 CCDC25Q86WR0 208 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 RPUSD2Q8IZ73 545 aaKnown RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 ATL2Q8NHH9 583 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ZNF398Q8TD17 642 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 L3MBTL3Q96JM7 780 aaPredicted RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 TGS1Q96RS0 853 aaKnown RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 RUSC1Q9BVN2 902 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 PHACTR1Q9C0D0 580 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 CDC42EP4Q9H3Q1 356 aaKnown RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 AVENQ9NQS1 362 aaPredicted RBP6.55□□□□□ -1.36
HERC4-209ENST00000473533 KCNG1Q9UIX4 513 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 ANAPC5Q9UJX4 755 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 USH1CQ9Y6N9 552 aa6.55□□□□□ -1.36
HERC4-209ENST00000473533 A0A1W2PRG0 241 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 G3V3G9 751 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 MEIS1O00470 390 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 RARAP10276 462 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 CCNB1P14635 433 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 BRAFP15056 766 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 SLC16A2P36021 539 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 IFNAR2P48551 515 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 PSEN1P49768 467 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 PEX5P50542 639 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 EIF6P56537 245 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 KRT17Q04695 432 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ZNF211Q13398 564 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 RRP1BQ14684 758 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 CERKLQ49MI3 558 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 DCAF8Q5TAQ9 597 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 FYB2Q5VWT5 728 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 EXOC3L1Q86VI1 746 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 XXYLT1Q8NBI6 393 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 EPS8L3Q8TE67 593 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 ZNF653Q96CK0 615 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ARHGEF26Q96DR7 871 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 HSD17B14Q9BPX1 270 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 KCNQ5Q9NR82 932 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 SPATS2LQ9NUQ6 558 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 PI4KBQ9UBF8 816 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 CORO1CQ9ULV4 474 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 STARD13Q9Y3M8 1113 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ZMYM2Q9UBW7 1377 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 GSTTP1A0A1W2PQM5 241 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 TMEM110-MUSTN1A8MSY1 372 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 IGF2BP3O00425 579 aaKnown RBP eCLIP6.54□□□□□ -1.36
HERC4-209ENST00000473533 ZC3H11AO75152 810 aaKnown RBP eCLIP6.54□□□□□ -1.36
HERC4-209ENST00000473533 NEBLO76041 1014 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 FGFR4P22455 802 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 MXI1P50539 228 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 IFI35P80217 286 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 MRPS35P82673 323 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 SPARCL1Q14515 664 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 CRY2Q49AN0 593 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 WASHC2DQ5SRD0 308 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 LIN9Q5TKA1 542 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 VSIG1Q86XK7 387 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 TPH2Q8IWU9 490 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ALG3Q92685 438 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 SLC5A5Q92911 643 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 RIT2Q99578 217 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 NUP85Q9BW27 656 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ERVK-5Q9HDB9 667 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 TMOD4Q9NZQ9 345 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 TCEAL9Q9UHQ7 104 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 CCNL1Q9UK58 526 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 MRPL11Q9Y3B7 192 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 ZNF335Q9H4Z2 1342 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 FOXN3O00409 490 aaPredicted RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 POLR2MP0CAP2 368 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 HOXA10P31260 410 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms