RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OR1G1P47890 313 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 PTPN5P54829 565 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 TCF15Q12870 199 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 IGSF22Q8N9C0 903 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 DEPTORQ8TB45 409 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 TBC1D32Q96NH3 1257 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 C2orf40Q9H1Z8 148 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 BHMT2Q9H2M3 363 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 ADAM7Q9H2U9 754 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 POMKQ9H5K3 350 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 MIOSQ9NXC5 875 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 GIT1Q9Y2X7 761 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 MTCL1Q9Y4B5 1905 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 PRKCBP05771 671 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 NAMPTP43490 491 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 MCM2P49736 904 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 PDIA5Q14554 519 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 TPRNQ4KMQ1 711 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 KANK3Q6NY19 840 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 PPP4R3CPQ6ZMV5 832 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 ZBTB33Q86T24 672 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 COLGALT2Q8IYK4 626 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 C12orf76Q8N812 135 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 PRIMPOLQ96LW4 560 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 KIFC3Q9BVG8 833 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 KLK14Q9P0G3 267 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 PARP2Q9UGN5 583 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 SMC3Q9UQE7 1217 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 USP20Q9Y2K6 914 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 STK24Q9Y6E0 443 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 CITO14578 2027 aa17.37■□□□□ 0.37
CCDC88B-205ENST00000472524 A0A1B0GUA9 196 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 TTLL13PA6NNM8 815 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 C2CD4DB7Z1M9 353 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 LAD1O00515 517 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 INPPL1O15357 1258 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 PDGFBP01127 241 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 CDC25AP30304 524 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 GIT2Q14161 759 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 PPP2R5AQ15172 486 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 PTPN14Q15678 1187 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 IL17AQ16552 155 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 MAPK6Q16659 721 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 KRT79Q5XKE5 535 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 CES5AQ6NT32 575 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 DTHD1Q6ZMT9 781 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 KREMEN2Q8NCW0 462 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 IFT74Q96LB3 600 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 FZD8Q9H461 694 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 MARCH5Q9NX47 278 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 IRAK3Q9Y616 596 aa17.36■□□□□ 0.37
CCDC88B-205ENST00000472524 E9PMD0 336 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 C2CD2LO14523 706 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 N4BP3O15049 544 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 EPCAMP16422 314 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 PRPHP41219 470 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 ITIH3Q06033 890 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 DSC1Q08554 894 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 PRPF4BQ13523 1007 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 ZRSR1Q15695 479 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 FAM187BQ17R55 369 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 RILPL1Q5EBL4 403 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 RARS2Q5T160 578 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 FEZF2Q8TBJ5 459 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 NECTIN4Q96NY8 510 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 RPS6KC1Q96S38 1066 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 SMOC2Q9H3U7 446 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 PDZD7Q9H5P4 517 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 NR2E1Q9Y466 385 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 DENND4AQ7Z401 1863 aa17.35■□□□□ 0.37
CCDC88B-205ENST00000472524 F8W810 466 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 EDN1P05305 212 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 URODP06132 367 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 AVPR2P30518 371 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 ATP2C1P98194 919 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 KIFAP3Q92845 792 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 PRRX2Q99811 253 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 HERC2P3Q9BVR0 1158 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 EMILIN2Q9BXX0 1053 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 CCDC113Q9H0I3 377 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 MRPL17Q9NRX2 175 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 FAM86C1Q9NVL1 165 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 STK39Q9UEW8 545 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 DNM3Q9UQ16 869 aa17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-205ENST00000472524 SPDYE4A6NLX3 237 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 ACKR2O00590 384 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 NR1I2O75469 434 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 BRD1O95696 1058 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 SOD2P04179 222 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 KLRC2P26717 231 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 GRIK3Q13003 919 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 MTMR3Q13615 1198 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 EEF1DP3Q658K8 133 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 TAS1R1Q7RTX1 841 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 GSTCDQ8NEC7 633 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 SLC22A17Q8WUG5 538 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 RABGGTAQ92696 567 aa17.33■□□□□ 0.36
CCDC88B-205ENST00000472524 RIPOR3Q96MK2 946 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms