RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 H0YIN7 160 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 PHF2O75151 1096 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TRABDQ9H4I3 376 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 A2ML1A8K2U0 1454 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 PLEKHG2Q9H7P9 1386 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 A8MXQ7 604 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TTKP33981 857 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 RXRGP48443 463 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TBC1D19Q8N5T2 526 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 CYFIP2Q96F07 1278 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 IL17RAQ96F46 866 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 E5RI56 91 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 EIF4A1P60842 406 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 LVRNQ6Q4G3 990 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CPXCR1Q8N123 301 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 FAM20AQ96MK3 541 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 TYK2P29597 1187 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 WDR93Q6P2C0 686 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 G2E3Q7L622 706 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 RCOR2Q8IZ40 523 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 FAM149B1Q96BN6 582 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 FOPNLQ96NB1 174 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 PRMT1Q99873 361 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 LMCD1Q9NZU5 365 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 WDR35Q9P2L0 1181 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 A0A1W2PQJ5 194 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 STX5Q13190 355 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CALML6Q8TD86 181 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 STX7O15400 261 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 MIGA2Q7L4E1 593 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 GCNAQ96QF7 691 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 PTPRKQ15262 1439 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 TRPC5OSA6NMA1 111 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 ABCB5Q2M3G0 1257 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 TBCKQ8TEA7 893 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CNOT8Q9UFF9 292 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 PCDHB8Q9UN66 801 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 RNF17Q9BXT8 1623 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 ANKARQ7Z5J8 1434 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 FRMPD1Q5SYB0 1578 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 KPNA4O00629 521 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 RTN2O75298 545 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 TFAMQ00059 246 aaKnown RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 DLGAP5Q15398 846 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 SMCR8Q8TEV9 937 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 NSL1Q96IY1 281 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 PALD1Q9ULE6 856 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 K7ERI5 159 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 PSMD14O00487 310 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 ALBP02768 609 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 ACTN3Q08043 901 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CATSPER3Q86XQ3 398 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 MAPKAPK5Q8IW41 473 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 HIPK4Q8NE63 616 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 RBBP8Q99708 897 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CD209Q9NNX6 404 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 CDYLQ9Y232 598 aa14.03□□□□□ -0.16
COL6A3-209ENST00000472056 ADAMTS2O95450 1211 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 ZFP1Q6P2D0 407 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 TRAPPC11Q7Z392 1133 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 CLEC4FQ8N1N0 589 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 EAF2Q96CJ1 260 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-209ENST00000472056 TOPORSQ9NS56 1045 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-209ENST00000472056 FKBP6O75344 327 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 WASHC5Q12768 1159 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 FAM83BQ5T0W9 1011 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 FAM160B2Q86V87 743 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 NLRP10Q86W26 655 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 VPS37AQ8NEZ2 397 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 SH3GL1Q99961 368 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 SLC9A2Q9UBY0 812 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 SLC4A7Q9Y6M7 1214 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 GNPATO15228 680 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 NR3C1P04150 777 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 EPHB1P54762 984 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 DYNLT1P63172 113 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 PIGHQ14442 188 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-209ENST00000472056 NIM1KQ8IY84 436 aa14.02□□□□□ -0.16
COL6A3-209ENST00000472056 PDE5AO76074 875 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 DGKHQ86XP1 1220 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 RNPC3Q96LT9 517 aaKnown RBP14.02□□□□□ -0.17
COL6A3-209ENST00000472056 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.02□□□□□ -0.17
COL6A3-209ENST00000472056 SLC18A3Q16572 532 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 CYFIP1Q7L576 1253 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 APOL4Q9BPW4 351 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 RAD21L1Q9H4I0 556 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 PAPOLBQ9NRJ5 636 aaKnown RBP14.02□□□□□ -0.17
COL6A3-209ENST00000472056 RHOBTB1O94844 696 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 KLHL12Q53G59 568 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 RAPGEF5Q92565 580 aa14.02□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF197O14709 1029 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ADD2P35612 726 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 NUP62P37198 522 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF667Q5HYK9 610 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ASAP3Q8TDY4 903 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FAM167BQ9BTA0 163 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 NAT9Q9BTE0 207 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ZWILCHQ9H900 591 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 LRCH1Q9Y2L9 728 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms