RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 RBM12BQ8IXT5 1001 aaKnown RBP7.53□□□□□ -1.2
PTCD3-208ENST00000469585 RPAP2Q8IXW5 612 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-208ENST00000469585 AFAP1L2Q8N4X5 818 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 ARRDC4Q8NCT1 418 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 CLEC4DQ8WXI8 215 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 DPF2Q92785 391 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 DCPSQ96C86 337 aaKnown RBP7.53□□□□□ -1.2
PTCD3-208ENST00000469585 NEUROD6Q96NK8 337 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 DIRC2Q96SL1 478 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 NOL10Q9BSC4 688 aaKnown RBP7.53□□□□□ -1.2
PTCD3-208ENST00000469585 BRINP2Q9C0B6 783 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 NSUN3Q9H649 340 aaKnown RBP7.53□□□□□ -1.2
PTCD3-208ENST00000469585 BCAS3Q9H6U6 928 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 CABP5Q9NP86 173 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 NMRK2Q9NPI5 230 aa7.53□□□□□ -1.2
PTCD3-208ENST00000469585 ZNF541Q9H0D2 1346 aa7.52□□□□□ -1.2
PTCD3-208ENST00000469585 LRRC37AA6NMS7 1700 aa7.52□□□□□ -1.2
PTCD3-208ENST00000469585 MYOCOSA0A1B0GUC4 107 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 ZNF891A8MT65 544 aaPredicted RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 PSMD14O00487 310 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 KCNK3O14649 394 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 PEX10O60683 326 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 LTFP02788 710 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 CENPBP07199 599 aaPredicted RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 NCLP19338 710 aaKnown RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 GMPSP49915 693 aaPredicted RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 C1QTNF8P60827 252 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 CXCL9Q07325 125 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 TUSC3Q13454 348 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 DHCR24Q15392 516 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 PTPROQ16827 1216 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 ARHGAP44Q17R89 818 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 EPHA10Q5JZY3 1008 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 OLFML2BQ68BL8 750 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 SPTY2D1Q68D10 685 aaPredicted RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 MCTP1Q6DN14 999 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 TMC6Q7Z403 805 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 MIB1Q86YT6 1006 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 NLGN4XQ8N0W4 816 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 NXPE1Q8N323 547 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 ANKRD44Q8N8A2 993 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 EPB41L4BQ9H329 900 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 GPRC5DQ9NZD1 345 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 TMOD2Q9NZR1 351 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 CNOT7Q9UIV1 285 aaKnown RBP7.52□□□□□ -1.21
PTCD3-208ENST00000469585 NUB1Q9Y5A7 615 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 COL4A3BPQ9Y5P4 624 aa7.52□□□□□ -1.21
PTCD3-208ENST00000469585 SCN4AP35499 1836 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 SLC12A8A0AV02 714 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 PTPDC1A2A3K4 754 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 CLASP2O75122 1294 aaKnown RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 RRP1P56182 461 aaKnown RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 SRSF3P84103 164 aaKnown RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 ZNF200P98182 395 aaPredicted RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 ATP8B2P98198 1209 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 MTX1Q13505 466 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 MLANAQ16655 118 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 TTC39AQ5SRH9 613 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 CREB3L3Q68CJ9 461 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 C15orf52Q6ZUT6 534 aaKnown RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 TRIM48Q8IWZ4 208 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 CLASRPQ8N2M8 674 aaKnown RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 WDR66Q8TBY9 1149 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 BOCQ9BWV1 1114 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 MCOLN1Q9GZU1 580 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 TAF1DQ9H5J8 278 aaPredicted RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 KCNK12Q9HB15 430 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 CD209Q9NNX6 404 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 PCDH12Q9NPG4 1184 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 DCP1AQ9NPI6 582 aaPredicted RBP7.51□□□□□ -1.21
PTCD3-208ENST00000469585 DENND2AQ9ULE3 1009 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 RIPOR2Q9Y4F9 1068 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 IRS2Q9Y4H2 1338 aa7.51□□□□□ -1.21
PTCD3-208ENST00000469585 WDR90Q96KV7 1748 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 TAF1P21675 1872 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 LRRC10BA6NIK2 292 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 RAB11FIP3O75154 756 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 SASH1O94885 1247 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 IFIT2P09913 472 aaKnown RBP7.5□□□□□ -1.21
PTCD3-208ENST00000469585 UQCRFS1P1P0C7P4 283 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 CNGA1P29973 690 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 SCNN1BP51168 640 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 CHAF1AQ13111 956 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-208ENST00000469585 TNFAIP1Q13829 316 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 DLGAP5Q15398 846 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 SEC23AQ15436 765 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 LRRC24Q50LG9 513 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 MFSD14BQ5SR56 506 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 XP32Q5T750 250 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-208ENST00000469585 OR2W6PQ8NHA6 318 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 KLHDC4Q8TBB5 520 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 ALG3Q92685 438 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 KIF1BPQ96EK5 621 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 GPR101Q96P66 508 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-208ENST00000469585 CNTD2Q9H8S5 307 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 MBD1Q9UIS9 605 aaPredicted RBP7.5□□□□□ -1.21
PTCD3-208ENST00000469585 ATP23Q9Y6H3 246 aa7.5□□□□□ -1.21
PTCD3-208ENST00000469585 FAM90A27PA6NNH2 459 aa7.49□□□□□ -1.21
PTCD3-208ENST00000469585 DVL2O14641 736 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms