RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 DPP9Q86TI2 863 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DDX42Q86XP3 938 aaKnown RBP eCLIP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ZNF713Q8N859 430 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ARRDC4Q8NCT1 418 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 TPCN2Q8NHX9 752 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 TBCKQ8TEA7 893 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 DNAJC19Q96DA6 116 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 ATG4CQ96DT6 458 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 FAXDC2Q96IV6 333 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 RAB17Q9H0T7 212 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 NOD2Q9HC29 1040 aa10.35□□□□□ -0.75
HDAC3-205ENST00000469550 UTP11Q9Y3A2 253 aaKnown RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 NOC2LQ9Y3T9 749 aaKnown RBP10.35□□□□□ -0.75
HDAC3-205ENST00000469550 KLRF2D3W0D1 207 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 PPP1R12AO14974 1030 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DAPK3O43293 454 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 SLC26A4O43511 780 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FLOT1O75955 427 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 COPB2P35606 906 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FLT3P36888 993 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 CLNS1AP54105 237 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 SATB1Q01826 763 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DHX9Q08211 1270 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 EDRF1Q3B7T1 1238 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 C1orf53Q5VUE5 145 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 KRT79Q5XKE5 535 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FAM133AQ8N9E0 248 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 RSRC1Q96IZ7 334 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DDX47Q9H0S4 455 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 KANSL2Q9H9L4 492 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 NAGPAQ9UK23 515 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 GFPT2O94808 682 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 CNGA1P29973 690 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 MMP13P45452 471 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DRG2P55039 364 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 RTP1P59025 263 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 PTK2Q05397 1052 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 COASYQ13057 564 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 ZNF268Q14587 947 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 CLUL1Q15846 466 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FAM26FQ5R3K3 315 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DPY19L2P1Q6NXN4 242 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 ZNF571Q7Z3V5 609 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 PEX26Q7Z412 305 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 RIOX2Q8IUF8 465 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 GPIHBP1Q8IV16 184 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 REXO1Q8N1G1 1221 aaKnown RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 DEFB123Q8N688 67 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 HES6Q96HZ4 224 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 MAML3Q96JK9 1138 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 TMEM47Q9BQJ4 181 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 AP1M1Q9BXS5 423 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 SENP6Q9GZR1 1112 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 BMP2KQ9NSY1 1161 aaPredicted RBP10.34□□□□□ -0.75
HDAC3-205ENST00000469550 MTMR10Q9NXD2 777 aa10.34□□□□□ -0.75
HDAC3-205ENST00000469550 FAM187AA6NFU0 413 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 CCDC169A6NNP5 214 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 TULP1O00294 542 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-205ENST00000469550 EEF2P13639 858 aaKnown RBP10.33□□□□□ -0.76
HDAC3-205ENST00000469550 TMEM132BQ14DG7 1078 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 LRRC41Q15345 812 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 HYIQ5T013 277 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 HIBCHQ6NVY1 386 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-205ENST00000469550 ALKBH5Q6P6C2 394 aaKnown RBP10.33□□□□□ -0.76
HDAC3-205ENST00000469550 CLEC10AQ8IUN9 316 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 CCDC63Q8NA47 563 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 REPS2Q8NFH8 660 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 SNX29Q8TEQ0 813 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 FMO2Q99518 471 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 TMEM109Q9BVC6 243 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 TRIM6Q9C030 488 aaPredicted RBP10.33□□□□□ -0.76
HDAC3-205ENST00000469550 PANK4Q9NVE7 773 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 AMACRQ9UHK6 382 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 PCDHA2Q9Y5H9 948 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 SZT2Q5T011 3432 aa10.33□□□□□ -0.76
HDAC3-205ENST00000469550 KBTBD13C9JR72 458 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 SSBP05455 408 aaKnown RBP eCLIP10.32□□□□□ -0.76
HDAC3-205ENST00000469550 H2AFZP0C0S5 128 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 TSPY3P0CV98 308 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 TSPY8P0CW00 308 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 ALADP13716 330 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 CALRP27797 417 aaKnown RBP10.32□□□□□ -0.76
HDAC3-205ENST00000469550 GBP1P32455 592 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 GBP2P32456 591 aaPredicted RBP10.32□□□□□ -0.76
HDAC3-205ENST00000469550 E2F5Q15329 346 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 PPP1R7Q15435 360 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 SLC39A5Q6ZMH5 540 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 H2AFVQ71UI9 128 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.32□□□□□ -0.76
HDAC3-205ENST00000469550 FRMD5Q7Z6J6 570 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 NT5DC3Q86UY8 548 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 VPS36Q86VN1 386 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 NCAPG2Q86XI2 1143 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 CCDC65Q8IXS2 484 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 ZNF444Q8N0Y2 327 aaPredicted RBP10.32□□□□□ -0.76
HDAC3-205ENST00000469550 SLC17A8Q8NDX2 589 aa10.32□□□□□ -0.76
HDAC3-205ENST00000469550 GLIS3Q8NEA6 775 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms