RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 COASYQ13057 564 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 GPM6BQ13491 265 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 CCDC85BQ15834 202 aaPredicted RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 ZNF568Q3ZCX4 644 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 NOMO2Q5JPE7 1267 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 GLB1LQ6UWU2 654 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 ZNF720Q7Z2F6 126 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 ZNF280BQ86YH2 543 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 CEP57L1Q8IYX8 460 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 MICALL1Q8N3F8 863 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 MRPS27Q92552 414 aaKnown RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 CLP1Q92989 425 aaKnown RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 BICD1Q96G01 975 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 IPO9Q96P70 1041 aaKnown RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 GAS2L1Q99501 681 aaPredicted RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 C7orf25Q9BPX7 421 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 TCHPQ9BT92 498 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 HAPLN2Q9GZV7 340 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 CDT1Q9H211 546 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 CUEDC2Q9H467 287 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 NRDE2Q9H7Z3 1164 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 MRPL44Q9H9J2 332 aaKnown RBP12.8□□□□□ -0.36
CUX1-207ENST00000465461 PTPRHQ9HD43 1115 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 TBC1D13Q9NVG8 400 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 ANKFY1Q9P2R3 1169 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 DNAJB4Q9UDY4 337 aa12.8□□□□□ -0.36
CUX1-207ENST00000465461 MYO9BQ13459 2157 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 FAM237AA0A1B0GTK4 181 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 FRMD3A2A2Y4 597 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 ARL5CA6NH57 179 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 ANKRD63C9JTQ0 380 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 ABLIM1O14639 778 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 GRM6O15303 877 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 GCNT3O95395 438 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 SLFN14P0C7P3 912 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 PRR29P0C7W0 189 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 MATR3P43243 847 aaKnown RBP eCLIP12.79□□□□□ -0.36
CUX1-207ENST00000465461 SCNN1GP51170 649 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 GTF2BQ00403 316 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 AMPD3Q01432 767 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 CCDC65Q8IXS2 484 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 THNSL1Q8IYQ7 743 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 LRRC43Q8N309 656 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 KLHL23Q8NBE8 558 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 COLGALT1Q8NBJ5 622 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 CNNM3Q8NE01 707 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 ADPGKQ9BRR6 497 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 LRRC27Q9C0I9 530 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 CACNG4Q9UBN1 327 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 KCNG1Q9UIX4 513 aa12.79□□□□□ -0.36
CUX1-207ENST00000465461 GOLGA6L4A6NEF3 574 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 H3BNC9 293 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 ZC3H11AO75152 810 aaKnown RBP eCLIP12.78□□□□□ -0.36
CUX1-207ENST00000465461 RECQL4O94761 1208 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 PRPF6O94906 941 aaKnown RBP12.78□□□□□ -0.36
CUX1-207ENST00000465461 ZNF202O95125 648 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 ITGB1P05556 798 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 GAP43P17677 238 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 PROZP22891 400 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 DNAJB1P25685 340 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 LIG4P49917 911 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 RNASELQ05823 741 aaKnown RBP12.78□□□□□ -0.36
CUX1-207ENST00000465461 ZBTB41Q5SVQ8 909 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 SLC39A4Q6P5W5 647 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 MPZL3Q6UWV2 235 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 GSTCDQ8NEC7 633 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 RABGGTAQ92696 567 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 SAMD11Q96NU1 681 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 PLAGL2Q9UPG8 496 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 GIT1Q9Y2X7 761 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 MTCH2Q9Y6C9 303 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 RALGAPA2Q2PPJ7 1873 aa12.78□□□□□ -0.36
CUX1-207ENST00000465461 C5orf67F2Z3F1 127 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 H0YCG3 227 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 HNRNPDLO14979 420 aaKnown RBP12.77□□□□□ -0.37
CUX1-207ENST00000465461 MEFVO15553 781 aaPredicted RBP12.77□□□□□ -0.37
CUX1-207ENST00000465461 KLRC4O43908 158 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 PPP1R37O75864 691 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 SLC11A1P49279 550 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 BCAR1P56945 870 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 DCAF4L1Q3SXM0 396 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 GLRA4Q5JXX5 417 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 KCNT2Q6UVM3 1135 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 KRBA2Q6ZNG9 492 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 UNC13DQ70J99 1090 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 TMEM173Q86WV6 379 aaPredicted RBP12.77□□□□□ -0.37
CUX1-207ENST00000465461 HACE1Q8IYU2 909 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 TMEM130Q8N3G9 435 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 URGCPQ8TCY9 931 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 PYM1Q9BRP8 204 aaKnown RBP12.77□□□□□ -0.37
CUX1-207ENST00000465461 STRA6Q9BX79 667 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 MRPL9Q9BYD2 267 aaKnown RBP12.77□□□□□ -0.37
CUX1-207ENST00000465461 MAGEF1Q9HAY2 307 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 UBN1Q9NPG3 1134 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 STXBP5LQ9Y2K9 1186 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 PCDHB12Q9Y5F1 795 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 PCDHGC5Q9Y5F6 944 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 CDH23Q9H251 3354 aa12.77□□□□□ -0.37
CUX1-207ENST00000465461 PLXNA4Q9HCM2 1894 aa12.76□□□□□ -0.37
CUX1-207ENST00000465461 F8W810 466 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms