RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TMPRSS7Q7RTY8 843 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 FGD2Q7Z6J4 655 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 CBARPQ8N350 705 aaPredicted RBP5.4□□□□□ -1.54
CSMD3-205ENST00000462254 CPA6Q8N4T0 437 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 ZGPATQ8N5A5 531 aaKnown RBP5.4□□□□□ -1.54
CSMD3-205ENST00000462254 RUFY2Q8WXA3 655 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 CLIP3Q96DZ5 547 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 TRMT2BQ96GJ1 504 aaKnown RBP5.4□□□□□ -1.54
CSMD3-205ENST00000462254 HDAC8Q9BY41 377 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.4□□□□□ -1.54
CSMD3-205ENST00000462254 VPS33BQ9H267 617 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 CRTAC1Q9NQ79 661 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 MAN1C1Q9NR34 630 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 HELLSQ9NRZ9 838 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 KLHL11Q9NVR0 708 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 LMCD1Q9NZU5 365 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 RAI14Q9P0K7 980 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 SUSD2Q9UGT4 822 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 NDOR1Q9UHB4 597 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 GIT1Q9Y2X7 761 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 PCDHA11Q9Y5I1 949 aa5.4□□□□□ -1.54
CSMD3-205ENST00000462254 OTOFQ9HC10 1997 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 B4E1Z4 1266 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PRRT4C9JH25 899 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 MEIS1O00470 390 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PSMD14O00487 310 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PRODHO43272 600 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 GPAA1O43292 621 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 SIGLEC6O43699 453 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 RAD17O75943 681 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 REC8O95072 547 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 MBD4O95243 580 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PF4V1P10720 104 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 LPOP22079 712 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 RECQLP46063 649 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 ID4P47928 161 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 FKBP1AP62942 108 aaKnown RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 DYNLL1P63167 89 aaKnown RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 EGR3Q06889 387 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 FAPQ12884 760 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 GRM3Q14832 879 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 CLEC16AQ2KHT3 1053 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 INAVAQ3KP66 663 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 CFAP100Q494V2 611 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 STRIP1Q5VSL9 837 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 NAA16Q6N069 864 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 ZSCAN25Q6NSZ9 544 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 UBE2R2Q712K3 238 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 EPM2AIP1Q7L775 607 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 KIF18BQ86Y91 864 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 DZIP1Q86YF9 867 aaKnown RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 C7orf61Q8IZ16 206 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 LCORLQ8N3X6 602 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PDILTQ8N807 584 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 MIGA1Q8NAN2 632 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 LRRN4CLQ8ND94 238 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 SYTL5Q8TDW5 730 aaPredicted RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 TBC1D22AQ8WUA7 517 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 FUBP3Q96I24 572 aaKnown RBP eCLIP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 AIFM3Q96NN9 605 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 RIOK1Q9BRS2 568 aaKnown RBP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 ARMT1Q9H993 441 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.39□□□□□ -1.55
CSMD3-205ENST00000462254 GFOD1Q9NXC2 390 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 DUSP13Q9UII6 198 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 FBXL21Q9UKT6 434 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PHTF1Q9UMS5 762 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 ZNF451Q9Y4E5 1061 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PCDHB12Q9Y5F1 795 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 MROH7-TTC4A0A0A0MT08 1334 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 WDR90Q96KV7 1748 aa5.39□□□□□ -1.55
CSMD3-205ENST00000462254 PAPPA2Q9BXP8 1791 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 F8W031 263 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 FZD9O00144 591 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 CBFA2T2O43439 604 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 EPB41L2O43491 1005 aaKnown RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 PRKAB2O43741 272 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 PIP5K1CO60331 668 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 ITGAVP06756 1048 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 HSPD1P10809 573 aaKnown RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 CCND1P24385 295 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 CTSKP43235 329 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 SCNN1BP51168 640 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 KRT85P78386 507 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 POU5F1Q01860 360 aaKnown RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 CXCL9Q07325 125 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 GALEQ14376 348 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 KCTD2Q14681 263 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 NECTIN1Q15223 517 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 RALGPS1Q5JS13 557 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 CDCA2Q69YH5 1023 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 ZNF227Q86WZ6 799 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 ZNF354CQ86Y25 554 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 DAGLBQ8NCG7 672 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 ENOX1Q8TC92 643 aaKnown RBP5.38□□□□□ -1.55
CSMD3-205ENST00000462254 MAP4K1Q92918 833 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 TCTN2Q96GX1 697 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 SCLYQ96I15 445 aa5.38□□□□□ -1.55
CSMD3-205ENST00000462254 SCLT1Q96NL6 688 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms