RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MATR3P43243 847 aaKnown RBP eCLIP25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 LIG4P49917 911 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 GTF2BQ00403 316 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 ZC2HC1CQ53FD0 456 aaPredicted RBP25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 NOMO2Q5JPE7 1267 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 MPZL3Q6UWV2 235 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 ZPBP2Q6X784 338 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 ZBTB33Q86T24 672 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 MYLIPQ8WY64 445 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 KCNN1Q92952 543 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 RNF39Q9H2S5 420 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 ST6GALNAC4Q9H4F1 302 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 HCSTQ9UBK5 93 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 PARP2Q9UGN5 583 aa25.05■■□□□ 1.6
CCDC28B-203ENST00000461819 CITO14578 2027 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 EPOPA6NHQ4 379 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 TOM1L1O75674 476 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 ZNF202O95125 648 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 HARSP12081 509 aaKnown RBP25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 MLH1P40692 756 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 RNASELQ05823 741 aaKnown RBP25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 CUL4BQ13620 913 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 ZNF720Q7Z2F6 126 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 GDPD5Q8WTR4 605 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 HVCN1Q96D96 273 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 CDT1Q9H211 546 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 AAASQ9NRG9 546 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 GIT1Q9Y2X7 761 aa25.04■■□□□ 1.6
CCDC28B-203ENST00000461819 RFXAPO00287 272 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 LINC00271P0C7V0 271 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 LAG3P18627 525 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 BMPR1AP36894 532 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 NOLC1Q14978 699 aaKnown RBP eCLIP25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 KRBA2Q6ZNG9 492 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 LRRC55Q6ZSA7 311 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 UNC13DQ70J99 1090 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 MAP4K3Q8IVH8 894 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 CCDC34Q96HJ3 373 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 PTPRHQ9HD43 1115 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 TBC1D13Q9NVG8 400 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 SNTG2Q9NY99 539 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 GDAQ9Y2T3 454 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 PCDHB12Q9Y5F1 795 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 TRIP11Q15643 1979 aa25.03■■□□□ 1.6
CCDC28B-203ENST00000461819 PLXNA4Q9HCM2 1894 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 ARL5CA6NH57 179 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 CLDN3O15551 220 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 MCF2P10911 925 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 FOSL2P15408 326 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 PROZP22891 400 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 ALCAMQ13740 583 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 STXBP4Q6ZWJ1 553 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 ZBTB45Q96K62 511 aaPredicted RBP25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 ZFP42Q96MM3 310 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 RPS6KC1Q96S38 1066 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 GAD1Q99259 594 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 C11orf84Q9BUA3 381 aaPredicted RBP25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 PLVAPQ9BX97 442 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 GBP3Q9H0R5 595 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 CWH43Q9H720 699 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 KLK14Q9P0G3 267 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 KANSL3Q9P2N6 904 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 PCDHB13Q9Y5F0 798 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 TRANK1O15050 2925 aa25.02■■□□□ 1.6
CCDC28B-203ENST00000461819 GTPBP6O43824 516 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 PPP1R37O75864 691 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 RECQL4O94761 1208 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 POMCP01189 267 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 PIGRP01833 764 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 MYL1P05976 194 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 RB1P06400 928 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 MYBP10242 640 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 CASP5P51878 434 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 FAM160A1Q05DH4 1040 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 FAM26FQ5R3K3 315 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 FMR1NBQ8N0W7 255 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 COLGALT1Q8NBJ5 622 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 HPS3Q969F9 1004 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 FAM193BQ96PV7 902 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 ACCSQ96QU6 501 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 CCDC94Q9BW85 323 aaPredicted RBP25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 EXOC7Q9UPT5 735 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 ZMYM2Q9UBW7 1377 aa25.01■■□□□ 1.59
CCDC28B-203ENST00000461819 PVALEFA0A1B0GWK0 134 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 C5orf67F2Z3F1 127 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 ABLIM1O14639 778 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 ZC3H11AO75152 810 aaKnown RBP eCLIP25■■□□□ 1.59
CCDC28B-203ENST00000461819 IGFBP4P22692 258 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 SCNN1GP51170 649 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 AFF1P51825 1210 aaKnown RBP25■■□□□ 1.59
CCDC28B-203ENST00000461819 OSTNP61366 133 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 GPM6BQ13491 265 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 L1TD1Q5T7N2 865 aaKnown RBP25■■□□□ 1.59
CCDC28B-203ENST00000461819 CEP120Q8N960 986 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 TMEM87AQ8NBN3 555 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 ZNF558Q96NG5 402 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 FGFBP2Q9BYJ0 223 aa25■■□□□ 1.59
CCDC28B-203ENST00000461819 H3BNC9 293 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 GRM5P41594 1212 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 YARSP54577 528 aaKnown RBP24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms