RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 TRIP11Q15643 1979 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 A0A0B4J269 797 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 CLDN3O15551 220 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 UPP2O95045 317 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 GJB5O95377 273 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 MCF2P10911 925 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 SKIP12755 728 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 ATP2A2P16615 1042 aaKnown RBP12.34□□□□□ -0.43
SSBP1-202ENST00000461433 PRCPP42785 496 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 KNOP1Q1ED39 458 aaKnown RBP12.34□□□□□ -0.43
SSBP1-202ENST00000461433 TMEM132AQ24JP5 1023 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 DCAF4L1Q3SXM0 396 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 ZNF568Q3ZCX4 644 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 AGMOQ6ZNB7 445 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 ZBTB33Q86T24 672 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 HERC6Q8IVU3 1022 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 TMEM192Q8IY95 271 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 GUF1Q8N442 669 aaKnown RBP12.34□□□□□ -0.43
SSBP1-202ENST00000461433 CEP120Q8N960 986 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 LPPQ93052 612 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 RC3H2Q9HBD1 1191 aaKnown RBP12.34□□□□□ -0.43
SSBP1-202ENST00000461433 ANKFY1Q9P2R3 1169 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 PCDHB7Q9Y5E2 793 aa12.34□□□□□ -0.43
SSBP1-202ENST00000461433 A0A1W2PPC1 479 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 MEFVO15553 781 aaPredicted RBP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 DGKIO75912 1065 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 FGFR1P11362 822 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 CD44P16070 742 aaKnown RBP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 PTMSP20962 102 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 HTRA4P83105 476 aaPredicted RBP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 NOLC1Q14978 699 aaKnown RBP eCLIP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 CLLU1OSQ5K130 101 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 FAM117BQ6P1L5 589 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 SYCP3Q8IZU3 236 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 TRIML1Q8N9V2 468 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 ZSWIM2Q8NEG5 633 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 ZNF689Q96CS4 500 aaPredicted RBP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 ADPGKQ9BRR6 497 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 TCHPQ9BT92 498 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 TRIM6Q9C030 488 aaPredicted RBP12.33□□□□□ -0.44
SSBP1-202ENST00000461433 GBP3Q9H0R5 595 aa12.33□□□□□ -0.44
SSBP1-202ENST00000461433 PPP1R3GB7ZBB8 358 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 STAG3L1P0CL83 205 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 IBSPP21815 317 aaPredicted RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 AKAP5P24588 427 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 GRM5P41594 1212 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 GATMP50440 423 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 AFF1P51825 1210 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 RABGGTBP53611 331 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 SEZ6Q53EL9 994 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 ZBTB41Q5SVQ8 909 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CCDC183Q5T5S1 534 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 SLFN12LQ6IEE8 588 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 ADSSL1Q8N142 457 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 RNF169Q8NCN4 708 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CBWD1Q9BRT8 395 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CXCL16Q9H2A7 254 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 SEMA6BQ9H3T3 888 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 AGPAT3Q9NRZ7 376 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 SNTG2Q9NY99 539 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 ANK1P16157 1881 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 LAMA3Q16787 3333 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CITO14578 2027 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 PDXKO00764 312 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 OFD1O75665 1012 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 HARSP12081 509 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 ITGA4P13612 1032 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 GARTP22102 1010 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 TNFSF9P41273 254 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 SNRPFP62306 86 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 ZCWPW2Q504Y3 356 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CAVIN1Q6NZI2 390 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CRELD2Q6UXH1 353 aaPredicted RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 THNSL1Q8IYQ7 743 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 GSTCDQ8NEC7 633 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 TMEM174Q8WUU8 243 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 PGBD4Q96DM1 585 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 CASD1Q96PB1 797 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 MSTO1Q9BUK6 570 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 APOL6Q9BWW8 343 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 GTPBP4Q9BZE4 634 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 TYW1Q9NV66 732 aaKnown RBP12.32□□□□□ -0.44
SSBP1-202ENST00000461433 LRFN2Q9ULH4 789 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 TRAF3IP3Q9Y228 551 aa12.32□□□□□ -0.44
SSBP1-202ENST00000461433 PDCD11Q14690 1871 aaKnown RBP12.31□□□□□ -0.44
SSBP1-202ENST00000461433 CLIC2O15247 247 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 OGTO15294 1046 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 INPPL1O15357 1258 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 RECQL4O94761 1208 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 KIF20AO95235 890 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 MYOGP15173 224 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 PBX2P40425 430 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 PMS1P54277 932 aaKnown RBP12.31□□□□□ -0.44
SSBP1-202ENST00000461433 OSTNP61366 133 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 LRIT3Q3SXY7 679 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 CENPPQ6IPU0 288 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 ALKAL1Q6UXT8 129 aa12.31□□□□□ -0.44
SSBP1-202ENST00000461433 C12orf56Q8IXR9 622 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms