RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 EPAS1Q99814 870 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 OCEL1Q9H607 264 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 TXLNGQ9NUQ3 528 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PCMTD2Q9NV79 361 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 CCDC87Q9NVE4 849 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PHTF1Q9UMS5 762 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 DCCP43146 1447 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PITPNM2Q9BZ72 1349 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ANKRD36CQ5JPF3 1778 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 A0A1W2PRG0 241 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 USP17L10C9JJH3 530 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PODXLO00592 558 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 TGFB1I1O43294 461 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 KRT36O76013 467 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 LDHBP07195 334 aaKnown RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ALAS1P13196 640 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ROR2Q01974 943 aaKnown RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SETDB1Q15047 1291 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SIX1Q15475 284 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RNF43Q68DV7 783 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PHLDB3Q6NSJ2 640 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SLC13A5Q86YT5 568 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 UBL4BQ8N7F7 174 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 TRIM4Q9C037 500 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 LRMDAQ9H2I8 198 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 NINJ2Q9NZG7 142 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 DCTN4Q9UJW0 460 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PASKQ96RG2 1323 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SNED1Q8TER0 1413 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ANKRD62A6NC57 917 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RASA4BC9J798 803 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RASA4O43374 803 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 CALUO43852 315 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ECEL1O95672 775 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 UBTFL6P0CB48 400 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 YY1P25490 414 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 POLGP54098 1239 aaPredicted RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 OVGP1Q12889 678 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 CCDC6Q16204 474 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 PRR16Q569H4 304 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 ADGRF4Q8IZF3 695 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 TEX9Q8N6V9 391 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 MAGEB18Q96M61 343 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 MIPEPQ99797 713 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 INTS2Q9H0H0 1204 aaKnown RBP12.53□□□□□ -0.4
CPSF3-202ENST00000460593 RGL1Q9NZL6 768 aa12.53□□□□□ -0.4
CPSF3-202ENST00000460593 SYNGAP1Q96PV0 1343 aa12.52□□□□□ -0.4
CPSF3-202ENST00000460593 RREB1Q92766 1687 aa12.52□□□□□ -0.4
CPSF3-202ENST00000460593 GPR75-ASB3A0A0A6YYF3 556 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 FGFR1P11362 822 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 FMO5P49326 533 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 MRPS35P82673 323 aaKnown RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 ITPK1Q13572 414 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 RCN1Q15293 331 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 TBC1D10BQ4KMP7 808 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 EPM2AIP1Q7L775 607 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 RPUSD2Q8IZ73 545 aaKnown RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 GALNT15Q8N3T1 639 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 PRR11Q96HE9 360 aaPredicted RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 PCDHB18PQ96TA0 734 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 SYT11Q9BT88 431 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 STK33Q9BYT3 514 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 RIOX1Q9H6W3 641 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 JMJD4Q9H9V9 463 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 ALG13Q9NP73 1137 aaKnown RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 ASB3Q9Y575 518 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 TISP43B9A030 160 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 RNF8O76064 485 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 TTC4O95801 387 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 TTLL1O95922 423 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 ZCCHC18P0CG32 403 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 ALDH3A1P30838 453 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 C2CD6Q53TS8 623 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 MFN1Q8IWA4 741 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 SERPINB12Q96P63 405 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 HEMGNQ9BXL5 484 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 TAOK3Q9H2K8 898 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 WDR35Q9P2L0 1181 aa12.52□□□□□ -0.41
CPSF3-202ENST00000460593 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.52□□□□□ -0.41
CPSF3-202ENST00000460593 POC1B-GALNT4F8VUJ3 575 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 NVLO15381 856 aaKnown RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ATP9AO75110 1047 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 DLG4P78352 724 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 TRAF1Q13077 416 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 MTM1Q13496 603 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 TBC1D25Q3MII6 688 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PARP10Q53GL7 1025 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 OR52E8Q6IFG1 317 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 LLGL2Q6P1M3 1020 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PPP4R3CPQ6ZMV5 832 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 ARHGEF19Q8IW93 802 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 B4GALNT2Q8NHY0 566 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 AGPAT1Q99943 283 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 UBE2TQ9NPD8 197 aaPredicted RBP12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PARP2Q9UGN5 583 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 SHANK3Q9BYB0 1731 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 GSTTP1A0A1W2PQM5 241 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 WFS1O76024 890 aa12.51□□□□□ -0.41
CPSF3-202ENST00000460593 PICALMQ13492 652 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms