RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 GPD1LQ8N335 351 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 CSGALNACT2Q8N6G5 542 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 DBF4BQ8NFT6 615 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 SCLYQ96I15 445 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 ADAM2Q99965 735 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 MKNK1Q9BUB5 465 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 TSPYL2Q9H2G4 693 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-206ENST00000460235 ELAC1Q9H777 363 aaKnown RBP13.47□□□□□ -0.25
HDAC4-206ENST00000460235 AGO3Q9H9G7 860 aaKnown RBP13.47□□□□□ -0.25
HDAC4-206ENST00000460235 RGS18Q9NS28 235 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 LRFN2Q9ULH4 789 aa13.47□□□□□ -0.25
HDAC4-206ENST00000460235 A0A0U1RQF3 1178 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 CARNS1A5YM72 827 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 IKBKBO14920 756 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 EXTL3O43909 919 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 STX10O60499 249 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 CSDE1O75534 798 aaKnown RBP13.46□□□□□ -0.25
HDAC4-206ENST00000460235 AMHP03971 560 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 KRT13P13646 458 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 CSF2RAP15509 400 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 BMP6P22004 513 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PROZP22891 400 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 HOXA11P31270 313 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PSMC2P35998 433 aaKnown RBP13.46□□□□□ -0.25
HDAC4-206ENST00000460235 RGS19P49795 217 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 ENPEPQ07075 957 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 SPAG1Q07617 926 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 FILIP1Q7Z7B0 1213 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 BADQ92934 168 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 CPB2Q96IY4 423 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 ACAP3Q96P50 834 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 DNAJC25Q9H1X3 360 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 THAP9Q9H5L6 903 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PDZD7Q9H5P4 517 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 RPF1Q9H9Y2 349 aaKnown RBP13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PLEKHA5Q9HAU0 1116 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PTPRHQ9HD43 1115 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 FAM105AQ9NUU6 356 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 HSPBP1Q9NZL4 362 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 PCDHB7Q9Y5E2 793 aa13.46□□□□□ -0.25
HDAC4-206ENST00000460235 ZMYM2Q9UBW7 1377 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 SLC16A3O15427 465 aaKnown RBP13.45□□□□□ -0.26
HDAC4-206ENST00000460235 B4GALT5O43286 388 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 TGFB1I1O43294 461 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 XPOTO43592 962 aaKnown RBP13.45□□□□□ -0.26
HDAC4-206ENST00000460235 IL18RAPO95256 599 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 NPTXRO95502 500 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 ITGA4P13612 1032 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 FGFR4P22455 802 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 GRM5P41594 1212 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 PPP2R3AQ06190 1150 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 KCNA1Q09470 495 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 DSC3Q14574 896 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 MBTPS1Q14703 1052 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 ANKRD40Q6AI12 368 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 INTS8Q75QN2 995 aaKnown RBP13.45□□□□□ -0.26
HDAC4-206ENST00000460235 ZBTB33Q86T24 672 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 ABI1Q8IZP0 508 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 FAM200AQ8TCP9 573 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 FGFBP2Q9BYJ0 223 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 CDT1Q9H211 546 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 SEMA6BQ9H3T3 888 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 KANSL3Q9P2N6 904 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 R3HCC1Q9Y3T6 440 aaKnown RBP13.45□□□□□ -0.26
HDAC4-206ENST00000460235 PCDHB2Q9Y5E7 798 aa13.45□□□□□ -0.26
HDAC4-206ENST00000460235 UMODL1Q5DID0 1318 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 ANKRD63C9JTQ0 380 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 ENPP3O14638 875 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CLIC2O15247 247 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CD44P16070 742 aaKnown RBP13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CDK11BP21127 795 aaKnown RBP13.44□□□□□ -0.26
HDAC4-206ENST00000460235 HOXD13P35453 343 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CYP2J2P51589 502 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 AP3M2P53677 418 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CCDC40Q4G0X9 1142 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 ZCWPW2Q504Y3 356 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CEP135Q66GS9 1140 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 TTI2Q6NXR4 508 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 GLB1LQ6UWU2 654 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 NT5DC4Q86YG4 428 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 GLIS3Q8NEA6 775 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 CACTINQ8WUQ7 758 aaKnown RBP13.44□□□□□ -0.26
HDAC4-206ENST00000460235 FNBP1Q96RU3 617 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 FUCA2Q9BTY2 467 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 SRRTQ9BXP5 876 aaKnown RBP13.44□□□□□ -0.26
HDAC4-206ENST00000460235 ASB7Q9H672 318 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 DMAC2Q9NW81 257 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 TMEM161AQ9NX61 479 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 ZMYND8Q9ULU4 1186 aaPredicted RBP13.44□□□□□ -0.26
HDAC4-206ENST00000460235 GIT1Q9Y2X7 761 aa13.44□□□□□ -0.26
HDAC4-206ENST00000460235 HARSP12081 509 aaKnown RBP13.43□□□□□ -0.26
HDAC4-206ENST00000460235 EEF1GP26641 437 aaKnown RBP13.43□□□□□ -0.26
HDAC4-206ENST00000460235 STX17P56962 302 aa13.43□□□□□ -0.26
HDAC4-206ENST00000460235 FAM189BP81408 668 aa13.43□□□□□ -0.26
HDAC4-206ENST00000460235 CETN1Q12798 172 aa13.43□□□□□ -0.26
HDAC4-206ENST00000460235 SNRNP35Q16560 246 aaKnown RBP13.43□□□□□ -0.26
HDAC4-206ENST00000460235 FRMD5Q7Z6J6 570 aa13.43□□□□□ -0.26
HDAC4-206ENST00000460235 MRPL10Q7Z7H8 261 aaKnown RBP13.43□□□□□ -0.26
HDAC4-206ENST00000460235 ECHDC2Q86YB7 292 aa13.43□□□□□ -0.26
HDAC4-206ENST00000460235 NPAS4Q8IUM7 802 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms