RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 GRIK3Q13003 919 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 PRPF4BQ13523 1007 aaKnown RBP13.29□□□□□ -0.28
USP40-210ENST00000454354 PTPN14Q15678 1187 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 RINT1Q6NUQ1 792 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 LLGL2Q6P1M3 1020 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 DAW1Q8N136 415 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 PNMA5Q96PV4 448 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 HERC2P3Q9BVR0 1158 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 TIPINQ9BVW5 301 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 APOL6Q9BWW8 343 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 HCFC2Q9Y5Z7 792 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 PHLPP2Q6ZVD8 1323 aa13.29□□□□□ -0.28
USP40-210ENST00000454354 TECTAO75443 2155 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 VWA3AA6NCI4 1184 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 LOC730098B7Z3J9 87 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 SLC26A4O43511 780 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 GPR37L1O60883 481 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 LILRB3O75022 631 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 BMP15O95972 392 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 SOD2P04179 222 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 ALADP13716 330 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 AKAP5P24588 427 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 GUCY2CP25092 1073 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 MAPK7Q13164 816 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 CBX2Q14781 532 aaPredicted RBP13.28□□□□□ -0.28
USP40-210ENST00000454354 C1orf186Q6ZWK4 172 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 AUTS2Q8WXX7 1259 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 DRC1Q96MC2 740 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 KIFC3Q9BVG8 833 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 RUSC1Q9BVN2 902 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 PHF7Q9BWX1 381 aaPredicted RBP13.28□□□□□ -0.28
USP40-210ENST00000454354 NT5C3AQ9H0P0 336 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 C11orf16Q9NQ32 467 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 DZANK1Q9NVP4 752 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 ARHGAP28Q9P2N2 729 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 MYO10Q9HD67 2058 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 ZNF318Q5VUA4 2279 aa13.28□□□□□ -0.28
USP40-210ENST00000454354 DCXO43602 365 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 HIP1RO75146 1068 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 PDCP20941 246 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 OR1G1P47890 313 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 NPTX2P47972 431 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 DCAF4L1Q3SXM0 396 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 TPRNQ4KMQ1 711 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 TMEM119Q4V9L6 283 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 NT5DC1Q5TFE4 455 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 EEF1DP3Q658K8 133 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 SLC22A17Q8WUG5 538 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 AK8Q96MA6 479 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 ADPGKQ9BRR6 497 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 TMEM134Q9H6X4 195 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 C17orf75Q9HAS0 396 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 POLD4Q9HCU8 107 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 KCND2Q9NZV8 630 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 PARP2Q9UGN5 583 aa13.27□□□□□ -0.29
USP40-210ENST00000454354 PRG3Q9Y2Y8 225 aaPredicted RBP13.27□□□□□ -0.29
USP40-210ENST00000454354 K7ERI5 159 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 NR1I2O75469 434 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 RECQL4O94761 1208 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 CA8P35219 290 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 PEX3P56589 373 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 ITIH3Q06033 890 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 DMP1Q13316 513 aaPredicted RBP13.26□□□□□ -0.29
USP40-210ENST00000454354 TUSC3Q13454 348 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 TMEM132AQ24JP5 1023 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 HERC4Q5GLZ8 1057 aaPredicted RBP13.26□□□□□ -0.29
USP40-210ENST00000454354 TMEM31Q5JXX7 168 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 ATF7IP2Q5U623 682 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 PPFIBP1Q86W92 1011 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 GPR65Q8IYL9 337 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 SYT2Q8N9I0 419 aaPredicted RBP13.26□□□□□ -0.29
USP40-210ENST00000454354 INTS4Q96HW7 963 aaKnown RBP13.26□□□□□ -0.29
USP40-210ENST00000454354 RPS6KC1Q96S38 1066 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 LRFN3Q9BTN0 628 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 ADAM7Q9H2U9 754 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 MRPL17Q9NRX2 175 aaKnown RBP13.26□□□□□ -0.29
USP40-210ENST00000454354 SNTG2Q9NY99 539 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 KLK14Q9P0G3 267 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 USP20Q9Y2K6 914 aa13.26□□□□□ -0.29
USP40-210ENST00000454354 ANK1P16157 1881 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 F8W810 466 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 PTGESO14684 152 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 URODP06132 367 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 CNPP09543 421 aaKnown RBP13.25□□□□□ -0.29
USP40-210ENST00000454354 EPCAMP16422 314 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 LIG1P18858 919 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 COL9A1P20849 921 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 GLUD2P49448 558 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 CLCN4P51793 760 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 SLC12A3P55017 1021 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 DSG1Q02413 1049 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 NAB2Q15742 525 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 KIAA0319Q5VV43 1072 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 TAS1R3Q7RTX0 852 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 TAS1R1Q7RTX1 841 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 APBB1IPQ7Z5R6 666 aaPredicted RBP13.25□□□□□ -0.29
USP40-210ENST00000454354 CABP7Q86V35 215 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 RNF135Q8IUD6 432 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 TMEM87AQ8NBN3 555 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 SPIRE2Q8WWL2 714 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms