RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZMYM2Q9UBW7 1377 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 XIRP2A4UGR9 3374 aa16.72■□□□□ 0.27
LIMS3-201ENST00000437679 TDRD15B5MCY1 1934 aaKnown RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 MYH15Q9Y2K3 1946 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 NPHP3-ACAD11A0A0J9YXS1 232 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 FSD2A1L4K1 749 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 SLC16A4O15374 487 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 EDN1P05305 212 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 KRT18P05783 430 aaKnown RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 ZSCAN22P10073 491 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 GTF2F1P35269 517 aaKnown RBP eCLIP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 NASPP49321 788 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 SCNN1GP51170 649 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 MCM6Q14566 821 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 CTC1Q2NKJ3 1217 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 ARSHQ5FYA8 562 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 NT5DC1Q5TFE4 455 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 EEF1DP3Q658K8 133 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 ADAMTS19Q8TE59 1207 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 LARP4BQ92615 738 aaKnown RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 ZFP42Q96MM3 310 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 RPS6KC1Q96S38 1066 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 CDCA3Q99618 268 aaPredicted RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 NTPCRQ9BSD7 190 aaKnown RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 KLK14Q9P0G3 267 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 LARSQ9P2J5 1176 aaKnown RBP16.71■□□□□ 0.27
LIMS3-201ENST00000437679 ODF2LQ9ULJ1 636 aa16.71■□□□□ 0.27
LIMS3-201ENST00000437679 H0YCG3 227 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 H3BQ06 376 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 B4GALT3O60512 393 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 NR1I2O75469 434 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 FAM13AO94988 1023 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 F13A1P00488 732 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 DDIT3P35638 169 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 NDUFV1P49821 464 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 CACNB1Q02641 598 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 STRN3Q13033 797 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 ADAM15Q13444 863 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 SMC1AQ14683 1233 aaKnown RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 PUS10Q3MIT2 529 aaKnown RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 RRAGBQ5VZM2 374 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 USP49Q70CQ1 688 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 DDX53Q86TM3 631 aaKnown RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 TMEM173Q86WV6 379 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 VPS52Q8N1B4 723 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 EFHBQ8N7U6 833 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 LRRC15Q8TF66 581 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 UHRF1Q96T88 793 aaPredicted RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 REEP2Q9BRK0 252 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 MIOSQ9NXC5 875 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 SNTG2Q9NY99 539 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 TFIP11Q9UBB9 837 aaKnown RBP16.7■□□□□ 0.26
LIMS3-201ENST00000437679 STK17AQ9UEE5 414 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 STK39Q9UEW8 545 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 TNFSF13BQ9Y275 285 aa16.7■□□□□ 0.26
LIMS3-201ENST00000437679 NRP1O14786 923 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 PER2O15055 1255 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 SPTLC2O15270 562 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 LINC01565O15544 149 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 CA8P35219 290 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 OR1G1P47890 313 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 GRIK3Q13003 919 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 DUSP6Q16828 381 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 PTCRAQ6ISU1 281 aaPredicted RBP16.69■□□□□ 0.26
LIMS3-201ENST00000437679 TAS1R3Q7RTX0 852 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 COLGALT2Q8IYK4 626 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 LINC00301Q8NCQ3 95 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.69■□□□□ 0.26
LIMS3-201ENST00000437679 ACO2Q99798 780 aaKnown RBP16.69■□□□□ 0.26
LIMS3-201ENST00000437679 PARVGQ9HBI0 331 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 FAM50BQ9Y247 325 aa16.69■□□□□ 0.26
LIMS3-201ENST00000437679 HIDE1A8MVS5 230 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 PPP6R2O75170 966 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 TBCAO75347 108 aaKnown RBP16.68■□□□□ 0.26
LIMS3-201ENST00000437679 RECQL4O94761 1208 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 YEATS4O95619 227 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 CXCL14O95715 111 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 LTBRP36941 435 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 DSC1Q08554 894 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 ZNF568Q3ZCX4 644 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 CCDC73Q6ZRK6 1079 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 MYCT1Q8N699 235 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 MRPL43Q8N983 215 aaKnown RBP16.68■□□□□ 0.26
LIMS3-201ENST00000437679 TMEM87AQ8NBN3 555 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 TMEM161BQ8NDZ6 487 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 GSTCDQ8NEC7 633 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 BCL7CQ8WUZ0 217 aaPredicted RBP16.68■□□□□ 0.26
LIMS3-201ENST00000437679 TCHPQ9BT92 498 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 TARS2Q9BW92 718 aaKnown RBP16.68■□□□□ 0.26
LIMS3-201ENST00000437679 COLEC11Q9BWP8 271 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 ZBP1Q9H171 429 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 ZHX3Q9H4I2 956 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 GDAQ9Y2T3 454 aa16.68■□□□□ 0.26
LIMS3-201ENST00000437679 PRG3Q9Y2Y8 225 aaPredicted RBP16.68■□□□□ 0.26
LIMS3-201ENST00000437679 GRXCR2A6NFK2 248 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 TBX10O75333 385 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 SRGAP2BP0DMP2 458 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 CTSAP10619 480 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 MAPTP10636 758 aaKnown RBP16.67■□□□□ 0.26
LIMS3-201ENST00000437679 SCP2P22307 547 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms