RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CCL15Q16663 113 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 FOXR2Q6PJQ5 311 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 LEKR1Q6ZMV7 388 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 NT5DC3Q86UY8 548 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 IFT20Q8IY31 132 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 UHMK1Q8TAS1 419 aaKnown RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 KRT35Q92764 455 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 TATDN2Q93075 761 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 CEP170P1Q96L14 293 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 PCDHB18PQ96TA0 734 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 ACBD3Q9H3P7 528 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 ZNF233A6NK53 670 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 EIF3DO15371 548 aaKnown RBP eCLIP10.23□□□□□ -0.77
CUX1-206ENST00000437600 SLC16A3O15427 465 aaKnown RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 KCNA2P16389 499 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 CNGA1P29973 690 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 HPDP32754 393 aaPredicted RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 MESDQ14696 234 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 DCAF12L1Q5VU92 463 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 GPAT2Q6NUI2 795 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 MAATS1Q7Z4T9 603 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 RPUSD2Q8IZ73 545 aaKnown RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 BRI3BPQ8WY22 251 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 CTNNBL1Q8WYA6 563 aaPredicted RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 ALG3Q92685 438 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 PTPN18Q99952 460 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 TMEM117Q9H0C3 514 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 ERVK-5Q9HDB9 667 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 MED4Q9NPJ6 270 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 CTTNBP2NLQ9P2B4 639 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 SEPT9Q9UHD8 586 aaPredicted RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 STK24Q9Y6E0 443 aa10.23□□□□□ -0.77
CUX1-206ENST00000437600 BZW2Q9Y6E2 419 aaKnown RBP10.23□□□□□ -0.77
CUX1-206ENST00000437600 DENND3A2RUS2 1198 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 FERP16591 822 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 PRKCIP41743 596 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 EPHB4P54760 987 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 MTERF2Q49AM1 385 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 SH3D19Q5HYK7 790 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 TMEM63BQ5T3F8 832 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 LBX2Q6XYB7 198 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 MS4A4AQ96JQ5 239 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 RUFY1Q96T51 708 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 FAM107BQ9H098 131 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 YY1AP1Q9H869 796 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 EFCC1Q9HA90 598 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 JPH1Q9HDC5 661 aaPredicted RBP10.22□□□□□ -0.77
CUX1-206ENST00000437600 ABT1Q9ULW3 272 aaKnown RBP10.22□□□□□ -0.77
CUX1-206ENST00000437600 PCDHA10Q9Y5I2 948 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 RBBP6Q7Z6E9 1792 aaKnown RBP10.22□□□□□ -0.77
CUX1-206ENST00000437600 BTBD19C9JJ37 291 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 PPP1R37O75864 691 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 MMEP08473 750 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 PLS3P13797 630 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 GUCY2CP25092 1073 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 NPTX2P47972 431 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 ACTR2P61160 394 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 PSMC5P62195 406 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 PDCLQ13371 301 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 XXYLT1Q8NBI6 393 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 FAM76AQ8TAV0 307 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 TAS1R2Q8TE23 839 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 MOV10L1Q9BXT6 1211 aaKnown RBP10.22□□□□□ -0.77
CUX1-206ENST00000437600 SPATC1LQ9H0A9 340 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 ODF2LQ9ULJ1 636 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 KCNH4Q9UQ05 1017 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 ALG6Q9Y672 507 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 LOC285556D6RIA3 1793 aa10.22□□□□□ -0.77
CUX1-206ENST00000437600 TCRBV7S2A1N4TA0A589 114 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 HSF2BPO75031 334 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 HARSP12081 509 aaKnown RBP10.21□□□□□ -0.77
CUX1-206ENST00000437600 AARSP49588 968 aaKnown RBP eCLIP10.21□□□□□ -0.772e-6■■■■■ 51.2
CUX1-206ENST00000437600 GUCY1A3Q02108 690 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 GHRHRQ02643 423 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 NNTQ13423 1086 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 SNAPC2Q13487 334 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 CFAP58Q5T655 872 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 SAPCD2Q86UD0 394 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 PIK3R5Q8WYR1 880 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 ZBTB45Q96K62 511 aaPredicted RBP10.21□□□□□ -0.77
CUX1-206ENST00000437600 TRIM7Q9C029 511 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 VIPAS39Q9H9C1 493 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 GDF3Q9NR23 364 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 SLC9A2Q9UBY0 812 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 AMFRQ9UKV5 643 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 AGTPBP1Q9UPW5 1226 aa10.21□□□□□ -0.77
CUX1-206ENST00000437600 ZNFX1Q9P2E3 1918 aaKnown RBP10.21□□□□□ -0.77
CUX1-206ENST00000437600 ADGRA3Q8IWK6 1321 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 PDHXO00330 501 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 MARK3P27448 753 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 KCNJ1P48048 391 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 ACOT2P49753 483 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 WNT7BP56706 349 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 KRT76Q01546 638 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 SNRNP35Q16560 246 aaKnown RBP10.21□□□□□ -0.78
CUX1-206ENST00000437600 CEP85LQ5SZL2 805 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 UBAP2Q5T6F2 1119 aaKnown RBP10.21□□□□□ -0.78
CUX1-206ENST00000437600 SPOPLQ6IQ16 392 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 NIPA1Q7RTP0 329 aa10.21□□□□□ -0.78
CUX1-206ENST00000437600 NOP9Q86U38 636 aaKnown RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms