RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 H0Y858 1186 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 INPPL1O15357 1258 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 TEX28O15482 410 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 LYPLA2O95372 231 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 ARL2P36404 184 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 SAFBQ15424 915 aaKnown RBP eCLIP16.09■□□□□ 0.17
SDC1-204ENST00000429035 AMHR2Q16671 573 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 FUT10Q6P4F1 479 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 OTOP3Q7RTS5 596 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 ZBTB8OSQ8IWT0 167 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 FLCNQ8NFG4 579 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 RABGGTAQ92696 567 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 HSD17B14Q9BPX1 270 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 TMEM60Q9H2L4 133 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 CACNG4Q9UBN1 327 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 GIT1Q9Y2X7 761 aa16.09■□□□□ 0.17
SDC1-204ENST00000429035 DOCK8Q8NF50 2099 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 GBP2P32456 591 aaPredicted RBP16.08■□□□□ 0.16
SDC1-204ENST00000429035 DSC1Q08554 894 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 GRIK3Q13003 919 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 GNL2Q13823 731 aaKnown RBP16.08■□□□□ 0.16
SDC1-204ENST00000429035 SLC27A1Q6PCB7 646 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 IFNLR1Q8IU57 520 aaPredicted RBP16.08■□□□□ 0.16
SDC1-204ENST00000429035 CCDC83Q8IWF9 413 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 HASPINQ8TF76 798 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 COLEC11Q9BWP8 271 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 FBXL21Q9UKT6 434 aa16.08■□□□□ 0.16
SDC1-204ENST00000429035 LILRB3O75022 631 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 MED24O75448 989 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 RFPL2O75678 378 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 SPATA31D3P0C874 917 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 RFX1P22670 979 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 ST3GAL1Q11201 340 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 POTEGQ6S5H5 508 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 C15orf39Q6ZRI6 1047 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 SPATA31D4Q6ZUB0 917 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 PALB2Q86YC2 1186 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 TMEM105Q8N8V8 129 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 MCPH1Q8NEM0 835 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 RIN2Q8WYP3 895 aaPredicted RBP16.07■□□□□ 0.16
SDC1-204ENST00000429035 SMG7Q92540 1137 aaKnown RBP16.07■□□□□ 0.16
SDC1-204ENST00000429035 C8orf76Q96K31 380 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 MTMR9Q96QG7 549 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 PIDD1Q9HB75 910 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 CLUHO75153 1309 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 TRIP11Q15643 1979 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 CACNA1HO95180 2353 aa16.07■□□□□ 0.16
SDC1-204ENST00000429035 CCDC195A0A1B0GUA6 201 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 ARHGEF35A5YM69 484 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 CASTOR2A6NHX0 329 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 GALR2O43603 387 aaPredicted RBP16.06■□□□□ 0.16
SDC1-204ENST00000429035 GFRA3O60609 400 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 OR52Z1P0C646 297 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 RPL17P18621 184 aaKnown RBP16.06■□□□□ 0.16
SDC1-204ENST00000429035 DSG1Q02413 1049 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 POU5F1BQ06416 359 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 ZNF174Q15697 407 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 GET4Q7L5D6 327 aaPredicted RBP16.06■□□□□ 0.16
SDC1-204ENST00000429035 ERMNQ8TAM6 284 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 STAMQ92783 540 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 NFKBIZQ9BYH8 718 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 TUFT1Q9NNX1 390 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 PRMT7Q9NVM4 692 aaPredicted RBP16.06■□□□□ 0.16
SDC1-204ENST00000429035 DPP7Q9UHL4 492 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 ADAM28Q9UKQ2 775 aa16.06■□□□□ 0.16
SDC1-204ENST00000429035 N4BP3O15049 544 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 TADA2AO75478 443 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 PRKCBP05771 671 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 TDGQ13569 410 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 ASTLQ6HA08 431 aaPredicted RBP16.05■□□□□ 0.16
SDC1-204ENST00000429035 CATSPER3Q86XQ3 398 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 RNF168Q8IYW5 571 aaPredicted RBP16.05■□□□□ 0.16
SDC1-204ENST00000429035 DEPTORQ8TB45 409 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 ADPGKQ9BRR6 497 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 GPR62Q9BZJ7 368 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 IRF2BPLQ9H1B7 796 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 C2orf40Q9H1Z8 148 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 DUSP12Q9UNI6 340 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 DOCK6Q96HP0 2047 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 VWA8A3KMH1 1905 aa16.05■□□□□ 0.16
SDC1-204ENST00000429035 SF3B1O75533 1304 aaKnown RBP eCLIP16.04■□□□□ 0.16
SDC1-204ENST00000429035 RECQL4O94761 1208 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 SPATA31C1P0DKV0 1188 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 PRPF4BQ13523 1007 aaKnown RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 HSP90AA2PQ14568 343 aaPredicted RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 USP41Q3LFD5 358 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 KIAA0319Q5VV43 1072 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 CDCA2Q69YH5 1023 aaPredicted RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 CWF19L1Q69YN2 538 aaKnown RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 PRSS55Q6UWB4 352 aaPredicted RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 PPP4R3CPQ6ZMV5 832 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 CEP57Q86XR8 500 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 FAM184AQ8NB25 1140 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 CMASQ8NFW8 434 aaPredicted RBP16.04■□□□□ 0.16
SDC1-204ENST00000429035 BSNDQ8WZ55 320 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 PRIMPOLQ96LW4 560 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 NACC1Q96RE7 527 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 KIFC3Q9BVG8 833 aa16.04■□□□□ 0.16
SDC1-204ENST00000429035 PDZD7Q9H5P4 517 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms