RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 OGTO15294 1046 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 STX10O60499 249 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 CD44P16070 742 aaKnown RBP11.01□□□□□ -0.65
CD44-207ENST00000425428 FGFR4P22455 802 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 KCNA1Q09470 495 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 FILIP1LQ4L180 1135 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 MFSD5Q6N075 450 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 C11orf57Q6ZUT1 292 aaPredicted RBP11.01□□□□□ -0.65
CD44-207ENST00000425428 FILIP1Q7Z7B0 1213 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 DEFB128Q7Z7B8 93 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 UBE2Q1Q7Z7E8 422 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 SLC9A9Q8IVB4 645 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 FNBP1Q96RU3 617 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 MKNK1Q9BUB5 465 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 FGFBP2Q9BYJ0 223 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 SEMA6BQ9H3T3 888 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 PCIF1Q9H4Z3 704 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 RPF1Q9H9Y2 349 aaKnown RBP11.01□□□□□ -0.65
CD44-207ENST00000425428 UBN1Q9NPG3 1134 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 LRFN2Q9ULH4 789 aa11.01□□□□□ -0.65
CD44-207ENST00000425428 TRIM49BA6NDI0 452 aa11□□□□□ -0.65
CD44-207ENST00000425428 PES1O00541 588 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 SLC16A3O15427 465 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 EXTL3O43909 919 aa11□□□□□ -0.65
CD44-207ENST00000425428 NPTXRO95502 500 aa11□□□□□ -0.65
CD44-207ENST00000425428 MTIF2P46199 727 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 MCL1Q07820 350 aa11□□□□□ -0.65
CD44-207ENST00000425428 CETN1Q12798 172 aa11□□□□□ -0.65
CD44-207ENST00000425428 CNKSR3Q6P9H4 555 aa11□□□□□ -0.65
CD44-207ENST00000425428 INTS8Q75QN2 995 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 TAS1R3Q7RTX0 852 aa11□□□□□ -0.65
CD44-207ENST00000425428 FAM186BQ8IYM0 893 aa11□□□□□ -0.65
CD44-207ENST00000425428 TMEM40Q8WWA1 233 aa11□□□□□ -0.65
CD44-207ENST00000425428 ACAP3Q96P50 834 aa11□□□□□ -0.65
CD44-207ENST00000425428 CBX8Q9HC52 389 aa11□□□□□ -0.65
CD44-207ENST00000425428 ERVK-5Q9HDB9 667 aa11□□□□□ -0.65
CD44-207ENST00000425428 ARMCX3Q9UH62 379 aaPredicted RBP11□□□□□ -0.65
CD44-207ENST00000425428 GTF3C5Q9Y5Q8 519 aaPredicted RBP11□□□□□ -0.65
CD44-207ENST00000425428 GOLGA6L3A6NEY3 463 aa11□□□□□ -0.65
CD44-207ENST00000425428 ANKRD63C9JTQ0 380 aa11□□□□□ -0.65
CD44-207ENST00000425428 MAPK13O15264 365 aa11□□□□□ -0.65
CD44-207ENST00000425428 B4GALT5O43286 388 aa11□□□□□ -0.65
CD44-207ENST00000425428 XPOTO43592 962 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 SERPINC1P01008 464 aa11□□□□□ -0.65
CD44-207ENST00000425428 CLTAP09496 248 aa11□□□□□ -0.65
CD44-207ENST00000425428 STAG3L1P0CL83 205 aa11□□□□□ -0.65
CD44-207ENST00000425428 EEF1GP26641 437 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 KCNJ6P48051 423 aa11□□□□□ -0.65
CD44-207ENST00000425428 PLCB2Q00722 1185 aa11□□□□□ -0.65
CD44-207ENST00000425428 POU5F1Q01860 360 aaKnown RBP11□□□□□ -0.65
CD44-207ENST00000425428 FPGSQ05932 587 aa11□□□□□ -0.65
CD44-207ENST00000425428 PPP2R3AQ06190 1150 aa11□□□□□ -0.65
CD44-207ENST00000425428 TTI2Q6NXR4 508 aa11□□□□□ -0.65
CD44-207ENST00000425428 CD302Q8IX05 232 aa11□□□□□ -0.65
CD44-207ENST00000425428 THNSL1Q8IYQ7 743 aa11□□□□□ -0.65
CD44-207ENST00000425428 ABI1Q8IZP0 508 aa11□□□□□ -0.65
CD44-207ENST00000425428 RNF214Q8ND24 703 aa11□□□□□ -0.65
CD44-207ENST00000425428 SCLYQ96I15 445 aa11□□□□□ -0.65
CD44-207ENST00000425428 ADAM2Q99965 735 aa11□□□□□ -0.65
CD44-207ENST00000425428 FAM213AQ9BRX8 229 aa11□□□□□ -0.65
CD44-207ENST00000425428 PDZD7Q9H5P4 517 aa11□□□□□ -0.65
CD44-207ENST00000425428 STYXL1Q9Y6J8 313 aa11□□□□□ -0.65
CD44-207ENST00000425428 A0A0B4J269 797 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 TGFB1I1O43294 461 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 HOXA2O43364 376 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 IL18RAPO95256 599 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 ITGA4P13612 1032 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 IBSPP21815 317 aaPredicted RBP10.99□□□□□ -0.65
CD44-207ENST00000425428 SNRNP35Q16560 246 aaKnown RBP10.99□□□□□ -0.65
CD44-207ENST00000425428 AMHR2Q16671 573 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 UVSSAQ2YD98 709 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 PLEKHG4Q58EX7 1191 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 TCERG1LQ5VWI1 586 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 SLC24A5Q71RS6 500 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 FRMD5Q7Z6J6 570 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 RDH13Q8NBN7 331 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 CACTINQ8WUQ7 758 aaKnown RBP10.99□□□□□ -0.65
CD44-207ENST00000425428 TMEM174Q8WUU8 243 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 FAM212AQ96EL1 285 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 RPS6KC1Q96S38 1066 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 CBWD1Q9BRT8 395 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 AGO3Q9H9G7 860 aaKnown RBP10.99□□□□□ -0.65
CD44-207ENST00000425428 FAM105AQ9NUU6 356 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 RBAKQ9NYW8 714 aaPredicted RBP10.99□□□□□ -0.65
CD44-207ENST00000425428 ZMYM2Q9UBW7 1377 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 PARP2Q9UGN5 583 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 PCDHB7Q9Y5E2 793 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 SCN5AQ14524 2016 aa10.99□□□□□ -0.65
CD44-207ENST00000425428 ABHD14A-ACY1A0A1B0GW23 586 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 KCNJ18B7U540 433 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 CBFA2T2O43439 604 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 CLSTN1O94985 981 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 EOMESO95936 686 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 CXCL10P02778 98 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 AMHP03971 560 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 HOXD13P35453 343 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 KCNJ12Q14500 433 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 ZCWPW2Q504Y3 356 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 PSRC1Q6PGN9 363 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 LUZP1Q86V48 1076 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms