RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 NAP1L1P55209 391 aaKnown RBP16.07■□□□□ 0.16
USP4-203ENST00000415188 TCERG1LQ5VWI1 586 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 TAPT1Q6NXT6 567 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 NFRKBQ6P4R8 1299 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 CCNI2Q6ZMN8 369 aaPredicted RBP16.07■□□□□ 0.16
USP4-203ENST00000415188 TLK2Q86UE8 772 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 COG1Q8WTW3 980 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 TOX2Q96NM4 488 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 FIZ1Q96SL8 496 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 LXNQ9BS40 222 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.07■□□□□ 0.16
USP4-203ENST00000415188 SIX2Q9NPC8 291 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.07■□□□□ 0.16
USP4-203ENST00000415188 GCNT4Q9P109 453 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 SALL4Q9UJQ4 1053 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 NENFQ9UMX5 172 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 FRMD4BQ9Y2L6 1034 aa16.07■□□□□ 0.16
USP4-203ENST00000415188 COL6A3P12111 3177 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 A0A0A6YYK5 440 aaPredicted RBP16.06■□□□□ 0.16
USP4-203ENST00000415188 DCDC2CA8MYV0 355 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 P4HBP07237 508 aaKnown RBP16.06■□□□□ 0.16
USP4-203ENST00000415188 CCDC172P0C7W6 258 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 RAG1P15918 1043 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 NMT1P30419 496 aaKnown RBP16.06■□□□□ 0.16
USP4-203ENST00000415188 STAT1P42224 750 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 ALDH5A1P51649 535 aaPredicted RBP16.06■□□□□ 0.16
USP4-203ENST00000415188 SNRPFP62306 86 aaKnown RBP16.06■□□□□ 0.16
USP4-203ENST00000415188 NKX3-2P78367 333 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 C2orf54Q08AI8 447 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 KIAA0753Q2KHM9 967 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 TAF3Q5VWG9 929 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 PCNX4Q63HM2 1172 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 MIER3Q7Z3K6 550 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 SLC17A8Q8NDX2 589 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 MORC4Q8TE76 937 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 STRA6Q9BX79 667 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 MTMR10Q9NXD2 777 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 UBIAD1Q9Y5Z9 338 aa16.06■□□□□ 0.16
USP4-203ENST00000415188 A0A0U1RQG5 324 aaPredicted RBP16.05■□□□□ 0.16
USP4-203ENST00000415188 DYNC1LI2O43237 492 aaPredicted RBP16.05■□□□□ 0.16
USP4-203ENST00000415188 PALMO75781 387 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 PPP1R37O75864 691 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 ACTN1P12814 892 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 KLRC1P26715 233 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 CASP4P49662 377 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 CDK7P50613 346 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 PTK2Q05397 1052 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 ODR4Q5SWX8 454 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 MEI1Q5TIA1 1274 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 ZNF571Q7Z3V5 609 aaPredicted RBP16.05■□□□□ 0.16
USP4-203ENST00000415188 C12orf56Q8IXR9 622 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 DRC1Q96MC2 740 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 TMEM206Q9H813 350 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 VTA1Q9NP79 307 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 AGPAT3Q9NRZ7 376 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 ADAMTS1Q9UHI8 967 aa16.05■□□□□ 0.16
USP4-203ENST00000415188 ARVCFO00192 962 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 CLIC2O15247 247 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 BUB1O43683 1085 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 N4BP1O75113 896 aaKnown RBP16.04■□□□□ 0.16
USP4-203ENST00000415188 FMO5P49326 533 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 NPEPPSP55786 919 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 RPS6P62753 249 aaKnown RBP16.04■□□□□ 0.16
USP4-203ENST00000415188 FSCN1Q16658 493 aaKnown RBP16.04■□□□□ 0.16
USP4-203ENST00000415188 XRRA1Q6P2D8 792 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 CXCL17Q6UXB2 119 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 RNF207Q6ZRF8 634 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 AENQ8WTP8 325 aaKnown RBP16.04■□□□□ 0.16
USP4-203ENST00000415188 LMBR1Q8WVP7 490 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 STK33Q9BYT3 514 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 AP5M1Q9H0R1 490 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 TBC1D22BQ9NU19 505 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 LARSQ9P2J5 1176 aaKnown RBP16.04■□□□□ 0.16
USP4-203ENST00000415188 NAGPAQ9UK23 515 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 TBX21Q9UL17 535 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 HPCAL4Q9UM19 191 aa16.04■□□□□ 0.16
USP4-203ENST00000415188 LRRIQ3A6PVS8 624 aaPredicted RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 MAPK13O15264 365 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 P4HA2O15460 535 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 HIP1RO75146 1068 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 ITGB5P18084 799 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 TNNT3P45378 269 aaPredicted RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 APBA1Q02410 837 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 ARID5AQ03989 594 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 MAPK7Q13164 816 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 NNTQ13423 1086 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 IQSEC1Q6DN90 963 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 ALKBH5Q6P6C2 394 aaKnown RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 TAF4BQ92750 862 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 PBKQ96KB5 322 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 FAM161BQ96MY7 647 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 ST6GALNAC4Q9H4F1 302 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 AGO4Q9HCK5 861 aaKnown RBP16.03■□□□□ 0.16
USP4-203ENST00000415188 STIM2Q9P246 746 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 H2AFZP0C0S5 128 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 SOX5P35711 763 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 JAK3P52333 1124 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 FPGSQ05932 587 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 KCNA1Q09470 495 aa16.03■□□□□ 0.16
USP4-203ENST00000415188 EMBQ6PCB8 327 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms