RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ADAM15Q13444 863 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 MCM6Q14566 821 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 ATF7IP2Q5U623 682 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 TAS1R3Q7RTX0 852 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 TMC7Q7Z402 723 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 GPBP1Q86WP2 473 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 RAD54LQ92698 747 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 NECAB3Q96P71 396 aaPredicted RBP16.31■□□□□ 0.2
LIMS4-201ENST00000413601 ADPGKQ9BRR6 497 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 TMEM134Q9H6X4 195 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 C17orf75Q9HAS0 396 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 ARHGAP28Q9P2N2 729 aa16.31■□□□□ 0.2
LIMS4-201ENST00000413601 TFIP11Q9UBB9 837 aaKnown RBP16.31■□□□□ 0.2
LIMS4-201ENST00000413601 RBM19Q9Y4C8 960 aaKnown RBP16.31■□□□□ 0.2
LIMS4-201ENST00000413601 CARNS1A5YM72 827 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 TBX10O75333 385 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 ALDH2P05091 517 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 PLS3P13797 630 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 CLUL1Q15846 466 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 DDX53Q86TM3 631 aaKnown RBP16.3■□□□□ 0.2
LIMS4-201ENST00000413601 COLGALT2Q8IYK4 626 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 VPS52Q8N1B4 723 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 EFHBQ8N7U6 833 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 GSTCDQ8NEC7 633 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 UHRF1Q96T88 793 aaPredicted RBP16.3■□□□□ 0.2
LIMS4-201ENST00000413601 REEP2Q9BRK0 252 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 TMEM175Q9BSA9 504 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 NTPCRQ9BSD7 190 aaKnown RBP16.3■□□□□ 0.2
LIMS4-201ENST00000413601 NGRNQ9NPE2 291 aaKnown RBP16.3■□□□□ 0.2
LIMS4-201ENST00000413601 SNTG2Q9NY99 539 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 FAN1Q9Y2M0 1017 aa16.3■□□□□ 0.2
LIMS4-201ENST00000413601 PDCD11Q14690 1871 aaKnown RBP16.3■□□□□ 0.2
LIMS4-201ENST00000413601 NRP1O14786 923 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 ZSCAN22P10073 491 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 CA8P35219 290 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 NASPP49321 788 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 NDUFV1P49821 464 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 SMTNP53814 917 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 RBM10P98175 930 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 DSC1Q08554 894 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 PKP1Q13835 747 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 SMC1AQ14683 1233 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 STK38Q15208 465 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 FOXD4L6Q3SYB3 417 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 PTCRAQ6ISU1 281 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 FOXD4L3Q6VB84 417 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 KRI1Q8N9T8 703 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 SPIRE2Q8WWL2 714 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 LARP4BQ92615 738 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 ZNF396Q96N95 335 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 ACO2Q99798 780 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 TARS2Q9BW92 718 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 VN1R3Q9BXE9 311 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 CCDC39Q9UFE4 941 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 GDAQ9Y2T3 454 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 MORC2Q9Y6X9 1032 aaPredicted RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 TCHHQ07283 1943 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 VCANP13611 3396 aa16.29■□□□□ 0.2
LIMS4-201ENST00000413601 SPTBN5Q9NRC6 3674 aaKnown RBP16.29■□□□□ 0.2
LIMS4-201ENST00000413601 C2orf71A6NGG8 1288 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 RECQL4O94761 1208 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 CXCL14O95715 111 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 GLP2RO95838 553 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 F13A1P00488 732 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 KRT18P05783 430 aaKnown RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 PDIA4P13667 645 aaKnown RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 IL9P15248 144 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 DDIT3P35638 169 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 OR1G1P47890 313 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 DUSP6Q16828 381 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 DCAF4L1Q3SXM0 396 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 MRPL43Q8N983 215 aaKnown RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 LINC00301Q8NCQ3 95 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 TMEM161BQ8NDZ6 487 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 AUTS2Q8WXX7 1259 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 RPS6KC1Q96S38 1066 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 MRPL4Q9BYD3 311 aaKnown RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 ZBP1Q9H171 429 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 CXCL16Q9H2A7 254 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 LARSQ9P2J5 1176 aaKnown RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 KCNG1Q9UIX4 513 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 ODF2LQ9ULJ1 636 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 TNFSF13BQ9Y275 285 aa16.28■□□□□ 0.2
LIMS4-201ENST00000413601 PRG3Q9Y2Y8 225 aaPredicted RBP16.28■□□□□ 0.2
LIMS4-201ENST00000413601 ZMYM2Q9UBW7 1377 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 GRXCR2A6NFK2 248 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 F8W810 466 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 SPTLC2O15270 562 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 MAPTP10636 758 aaKnown RBP16.27■□□□□ 0.2
LIMS4-201ENST00000413601 TXLNAP40222 546 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 GRIK3Q13003 919 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 STRN3Q13033 797 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 GIT2Q14161 759 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 PUS10Q3MIT2 529 aaKnown RBP16.27■□□□□ 0.2
LIMS4-201ENST00000413601 RRAGBQ5VZM2 374 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 ZBTB33Q86T24 672 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 MYCT1Q8N699 235 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 VN1R2Q8NFZ6 395 aa16.27■□□□□ 0.2
LIMS4-201ENST00000413601 CDCA3Q99618 268 aaPredicted RBP16.27■□□□□ 0.2
LIMS4-201ENST00000413601 PANK2Q9BZ23 570 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms