RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 FZD8Q9H461 694 aa13.55□□□□□ -0.24
CHMP3-204ENST00000409727 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.55□□□□□ -0.24
CHMP3-204ENST00000409727 TOPORSQ9NS56 1045 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-204ENST00000409727 HTTP42858 3142 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 MBLAC1A4D2B0 266 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 MAPK13O15264 365 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 NOL4O94818 638 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 GRK4P32298 578 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 OSTNP61366 133 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 MAP2K1Q02750 393 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 MTF1Q14872 753 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 TSR1Q2NL82 804 aaKnown RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 ZNF568Q3ZCX4 644 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 C1orf220Q5T0J3 134 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 LMBRD2Q68DH5 695 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 RRAGAQ7L523 313 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 SLAIN1Q8ND83 568 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 ZNF397Q8NF99 534 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 OR8K1Q8NGG5 319 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 SH3TC2Q8TF17 1288 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 VTI1AQ96AJ9 217 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 OSMRQ99650 979 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 CDHR5Q9HBB8 845 aa13.54□□□□□ -0.24
CHMP3-204ENST00000409727 TRMT1Q9NXH9 659 aaKnown RBP13.54□□□□□ -0.24
CHMP3-204ENST00000409727 SMIM35A0A1B0GVV1 85 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 LRRC53A6NM62 1247 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 LRRIQ3A6PVS8 624 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 ERLIN2O94905 339 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 GNAT1P11488 350 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 TNFSF9P41273 254 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 WNT7BP56706 349 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 ADAM17P78536 824 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 ZBED6P86452 979 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 FIGNQ5HY92 759 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 EEF1DP3Q658K8 133 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 CRELD2Q6UXH1 353 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 TSHZ1Q6ZSZ6 1077 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 PARD3BQ8TEW8 1205 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 CCDC51Q96ER9 411 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 MFSD14AQ96MC6 490 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 NFKBIZQ9BYH8 718 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 PRMT7Q9NVM4 692 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 RBAKQ9NYW8 714 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 A0A1W2PQJ5 194 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 STX10O60499 249 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 GPR32O75388 356 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 HSPA6P17066 643 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 POU5F1BQ06416 359 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 NOLC1Q14978 699 aaKnown RBP eCLIP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 GJB7Q6PEY0 223 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 TRIM65Q6PJ69 517 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 MPZL3Q6UWV2 235 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 ZNF410Q86VK4 478 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 THNSL1Q8IYQ7 743 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 KLHDC9Q8NEP7 349 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 FAM212AQ96EL1 285 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 DNAJC7Q99615 494 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 ADAMTS10Q9H324 1103 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 KIAA1586Q9HCI6 787 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 PDE11AQ9HCR9 933 aa13.53□□□□□ -0.24
CHMP3-204ENST00000409727 HMX1Q9NP08 348 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-204ENST00000409727 GTPBP10A4D1E9 387 aaKnown RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 USP27XA6NNY8 438 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 ARHGAP6O43182 974 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 LRRN2O75325 713 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 LDHAP00338 332 aaKnown RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 MXI1P50539 228 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 AMHR2Q16671 573 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 GDF6Q6KF10 455 aaPredicted RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 RNF180Q86T96 592 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 BAP1Q92560 729 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 FNBP1Q96RU3 617 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 CHP1Q99653 195 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 DESI2Q9BSY9 194 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 TMEM117Q9H0C3 514 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 INTS2Q9H0H0 1204 aaKnown RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 GANQ9H2C0 597 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 ZNHIT6Q9NWK9 470 aaKnown RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 CEP72Q9P209 647 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 GTF2IRD1Q9UHL9 959 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 FHOD1Q9Y613 1164 aa13.52□□□□□ -0.25
CHMP3-204ENST00000409727 TRIP12Q14669 1992 aaPredicted RBP13.52□□□□□ -0.25
CHMP3-204ENST00000409727 BRCA2P51587 3418 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 ABLIM1O14639 778 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 KIAA0391O15091 583 aaKnown RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 UCHL3P15374 230 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 ARF4P18085 180 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 TNNI1P19237 187 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 MCL1Q07820 350 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 RAPGEF1Q13905 1077 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 KLHDC7AQ5VTJ3 777 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 E4F1Q66K89 784 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 CCSAPQ6IQ19 270 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 RAD9BQ6WBX8 426 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 TOGARAM2Q6ZUX3 1019 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 USP37Q86T82 979 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 CEP120Q8N960 986 aa13.51□□□□□ -0.25
CHMP3-204ENST00000409727 PCSK9Q8NBP7 692 aaKnown RBP13.51□□□□□ -0.25
CHMP3-204ENST00000409727 TMC2Q8TDI7 906 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms