RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 SPATA31C1P0DKV0 1188 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 EPB41P11171 864 aaKnown RBP14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 ALADP13716 330 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 PRLRP16471 622 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 KCNA5P22460 613 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 SP2Q02086 613 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 NHLH1Q02575 133 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 ALCAMQ13740 583 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 PAPD7Q5XG87 772 aaKnown RBP14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 RRAGAQ7L523 313 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 TMCO2Q7Z6W1 182 aaPredicted RBP14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 COPS5Q92905 334 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 HPS3Q969F9 1004 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 LENG9Q96B70 501 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 RIT2Q99578 217 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 FAM53CQ9NYF3 392 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 PKD2L1Q9P0L9 805 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 ARMCX3Q9UH62 379 aaPredicted RBP14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 VAV3Q9UKW4 847 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 ODF2LQ9ULJ1 636 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 TRANK1O15050 2925 aa14.05□□□□□ -0.16
SMARCB1-203ENST00000407082 BRWD1Q9NSI6 2320 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 PJA2O43164 708 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 SORBS3O60504 671 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 LPXNO60711 386 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 ATP9AO75110 1047 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 GH1P01241 217 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 UBA1P22314 1058 aaKnown RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 NEDD9Q14511 834 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 MAP9Q49MG5 647 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 ARSHQ5FYA8 562 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 POTEGQ6S5H5 508 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 EPM2AIP1Q7L775 607 aaPredicted RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 TRAPPC11Q7Z392 1133 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 FAM178BQ8IXR5 827 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 DHX37Q8IY37 1157 aaKnown RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 MSANTD4Q8NCY6 345 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 SCFD1Q8WVM8 642 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 RUBCNQ92622 972 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 FBXL18Q96ME1 805 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 SENP7Q9BQF6 1050 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 ZNF577Q9BSK1 485 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 IFIH1Q9BYX4 1025 aaKnown RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 UBE2ZQ9H832 354 aaPredicted RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 AGO4Q9HCK5 861 aaKnown RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 PLCB1Q9NQ66 1216 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 FAM207AQ9NSI2 230 aaPredicted RBP14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 RNF14Q9UBS8 474 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 TCEAL9Q9UHQ7 104 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 NOD1Q9Y239 953 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 Q9Y3F1 56 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 JRKLQ9Y4A0 524 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 PCDHA13Q9Y5I0 950 aa14.04□□□□□ -0.16
SMARCB1-203ENST00000407082 SCN5AQ14524 2016 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 GTPBP10A4D1E9 387 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 LCHNA4D1U4 455 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 IPO5O00410 1097 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 PSMD10O75832 226 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 GGPS1O95749 300 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 AFPP02771 609 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 IQCF3P0C7M6 154 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 IL9P15248 144 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 KCNA2P16389 499 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 NR2F2P24468 414 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 RFC2P35250 354 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 MAGEA1P43355 309 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 KIF11P52732 1056 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 MYBPC2Q14324 1141 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 IFI16Q16666 785 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 CELF3Q5SZQ8 465 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 EP400NLQ6ZTU2 488 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 CYFIP1Q7L576 1253 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 VPS36Q86VN1 386 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 NELFCDQ8IXH7 590 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 OR6J1Q8NGC5 347 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 UBE2Q2Q8WVN8 375 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 HSD17B14Q9BPX1 270 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 REEP2Q9BRK0 252 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 MKNK1Q9BUB5 465 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 TIPINQ9BVW5 301 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 LSM14BQ9BX40 385 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 PARD6BQ9BYG5 372 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 IRX2Q9BZI1 471 aaPredicted RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 BCAS3Q9H6U6 928 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 MLXIPQ9HAP2 919 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 FBXL5Q9UKA1 691 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 REXO2Q9Y3B8 237 aaKnown RBP14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 PCDHB13Q9Y5F0 798 aa14.03□□□□□ -0.16
SMARCB1-203ENST00000407082 ATP8B3O60423 1300 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 SPDYE4A6NLX3 237 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 LRRC53A6NM62 1247 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 FANCGO15287 622 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 ZRANB2O95218 330 aaKnown RBP eCLIP14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 CCDC172P0C7W6 258 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 MAPTP10636 758 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 TCP1P17987 556 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 EIF4A3P38919 411 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 KCNH2Q12809 1159 aa14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 ITGB3BPQ13352 177 aaPredicted RBP14.02□□□□□ -0.17
SMARCB1-203ENST00000407082 LAMC2Q13753 1193 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms