RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CENPPQ6IPU0 288 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 USP37Q86T82 979 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 GALNT4Q8N4A0 578 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 CKAP2Q8WWK9 683 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 TSNARE1Q96NA8 513 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 PCDHA6Q9UN73 950 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 SMG5Q9UPR3 1016 aaKnown RBP9.9□□□□□ -0.83
COL28A1-201ENST00000399429 SIK3Q9Y2K2 1263 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 PCDHA8Q9Y5H6 950 aa9.9□□□□□ -0.83
COL28A1-201ENST00000399429 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ATMINO43313 823 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ADAMTS2O95450 1211 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 NR3C1P04150 777 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ITIH2P19823 946 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 COILP38432 576 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PDIA2Q13087 525 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PDIA6Q15084 440 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TRIM67Q6ZTA4 783 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PIGWQ7Z7B1 504 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 EIF1ADQ8N9N8 165 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 KIAA0895Q8NCT3 520 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ZNF564Q8TBZ8 553 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ATG4AQ8WYN0 398 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 NUP85Q9BW27 656 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 RANBP17Q9H2T7 1088 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 CNOT7Q9UIV1 285 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 GIPC1O14908 333 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TJP3O95049 919 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PSMG1O95456 288 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TDP2O95551 362 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TRIM49P0CI25 452 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TRIM49CP0CI26 452 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TPBGLP0DKB5 382 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 BASP1P80723 227 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 MTFR1Q15390 333 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 UBE2SQ16763 222 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 CDCA2Q69YH5 1023 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 SFR1Q86XK3 245 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 CNKSR2Q8WXI2 1034 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 RNF25Q96BH1 459 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 CNBD2Q96M20 576 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 MAK16Q9BXY0 300 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 SLC13A1Q9BZW2 595 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 THAP2Q9H0W7 228 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 COPEO14579 308 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ABLIM1O14639 778 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 LDHBP07195 334 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 KRT4P19013 534 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 SOX5P35711 763 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PSMD7P51665 324 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 NOP14P78316 857 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 CAV1Q03135 178 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 LMNB2Q03252 620 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 TRPC3Q13507 836 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PKN1Q16512 942 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 C11orf91Q3C1V1 193 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 KBTBD12Q3ZCT8 623 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 AADACL2Q6P093 401 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 NANOGNBQ7Z5D8 188 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 SCFD2Q8WU76 684 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 GFM2Q969S9 779 aaKnown RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 EYA3Q99504 573 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 BTBD10Q9BSF8 475 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 DENND2DQ9H6A0 471 aaPredicted RBP9.89□□□□□ -0.83
COL28A1-201ENST00000399429 PSTPIP2Q9H939 334 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 AIPL1Q9NZN9 384 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 ARMCX1Q9P291 453 aa9.89□□□□□ -0.83
COL28A1-201ENST00000399429 POTEB3A0JP26 581 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 POTECB2RU33 542 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 MCF2LO15068 1137 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 KDM1AO60341 852 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 USP17L8P0C7I0 530 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 PPIDQ08752 370 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 SFSWAPQ12872 951 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 GPS1Q13098 491 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 KRT81Q14533 505 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 BSPRYQ5W0U4 402 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 POTEBQ6S5H4 581 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 DPH6Q7L8W6 267 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 NR1H4Q96RI1 486 aaPredicted RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 OSBPL8Q9BZF1 889 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 MAD1L1Q9Y6D9 718 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 COMMD3-BMI1R4GMX3 469 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 STK10O94804 968 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 NSFP46459 744 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 GALK1P51570 392 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 PPP4R3CPQ6ZMV5 832 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 MARK2Q7KZI7 788 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ECHDC2Q86YB7 292 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 SCUBE1Q8IWY4 988 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 LRRC47Q8N1G4 583 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 INPP5DQ92835 1189 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 MRPL46Q9H2W6 279 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ARHGEF3Q9NR81 526 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 TBC1D23Q9NUY8 699 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 RTCBQ9Y3I0 505 aaKnown RBP9.88□□□□□ -0.83
COL28A1-201ENST00000399429 LOC100653049A0A140TA62 436 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 ARHGEF35A5YM69 484 aa9.88□□□□□ -0.83
COL28A1-201ENST00000399429 KRT34O76011 436 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms