RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SCAND2PQ9GZW5 306 aaPredicted RBP11.47□□□□□ -0.57
NEDD8-202ENST00000396828 ZSWIM4Q9H7M6 989 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 CACNG4Q9UBN1 327 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 DBR1Q9UK59 544 aaKnown RBP11.47□□□□□ -0.57
NEDD8-202ENST00000396828 FAN1Q9Y2M0 1017 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 B4GALT5O43286 388 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MARCH6O60337 910 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 N4BP1O75113 896 aaKnown RBP11.46□□□□□ -0.57
NEDD8-202ENST00000396828 KLRC2P26717 231 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 ARL2P36404 184 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MLH1P40692 756 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 SCNN1GP51170 649 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MBTD1Q05BQ5 628 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MTMR3Q13615 1198 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 CAPSQ13938 189 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 GIT2Q14161 759 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 FAM173BQ6P4H8 233 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 POTEGQ6S5H5 508 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 OTUD6AQ7L8S5 288 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 GPR149Q86SP6 731 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 CABP7Q86V35 215 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 RNF168Q8IYW5 571 aaPredicted RBP11.46□□□□□ -0.57
NEDD8-202ENST00000396828 ZDHHC14Q8IZN3 488 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 TMEM87AQ8NBN3 555 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 GSTCDQ8NEC7 633 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 URGCPQ8TCY9 931 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 PIGOQ8TEQ8 1089 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MTRQ99707 1265 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 TMEM175Q9BSA9 504 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 CXCL16Q9H2A7 254 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 DZANK1Q9NVP4 752 aa11.46□□□□□ -0.57
NEDD8-202ENST00000396828 MYH15Q9Y2K3 1946 aa11.46□□□□□ -0.58
NEDD8-202ENST00000396828 TDRD15B5MCY1 1934 aaKnown RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 DMXL1Q9Y485 3027 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 CNTNAP2Q9UHC6 1331 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TTLL13PA6NNM8 815 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 INO80B-WBP1J3KQ70 363 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TEX28O15482 410 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 ASAP2O43150 1006 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 DKC1O60832 514 aaKnown RBP eCLIP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 RFPL2O75678 378 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 SOD2P04179 222 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 SPATA31D3P0C874 917 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 ITGA4P13612 1032 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 ARF4P18085 180 aaPredicted RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 GLRA2P23416 452 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 AKAP5P24588 427 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 MCM4P33991 863 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TXKP42681 527 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 OR1G1P47890 313 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TRAPPC10P48553 1259 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 DSC1Q08554 894 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 BMS1Q14692 1282 aaKnown RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 KIAA0319Q5VV43 1072 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 SPATA31D4Q6ZUB0 917 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 UBALD2Q8IYN6 164 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TDRD5Q8NAT2 981 aaKnown RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TCP11Q8WWU5 503 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 RSPH1Q8WYR4 309 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 FAM193BQ96PV7 902 aaPredicted RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 MTMR9Q96QG7 549 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 RPS6KC1Q96S38 1066 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 APOL6Q9BWW8 343 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 CSRNP2Q9H175 543 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TMEM60Q9H2L4 133 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 NXF3Q9H4D5 531 aaKnown RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TTC12Q9H892 705 aaPredicted RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 GPRC5CQ9NQ84 441 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 KANSL3Q9P2N6 904 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 TFIP11Q9UBB9 837 aaKnown RBP11.45□□□□□ -0.58
NEDD8-202ENST00000396828 PCDHA12Q9UN75 941 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 USTQ9Y2C2 406 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 PPME1Q9Y570 386 aa11.45□□□□□ -0.58
NEDD8-202ENST00000396828 POTEMA6NI47 508 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 INPPL1O15357 1258 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 NARSO43776 548 aaKnown RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 ERLIN2O94905 339 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 LYPLA2O95372 231 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 SPATA31C1P0DKV0 1188 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 RARRES1P49788 294 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 CEBPZQ03701 1054 aaKnown RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 NFKBIBQ15653 356 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 NOTUMQ6P988 496 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 MAEAQ7L5Y9 396 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 IFNLR1Q8IU57 520 aaPredicted RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 EXOC8Q8IYI6 725 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 SLFN12Q8IYM2 578 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 ST13P5Q8NFI4 369 aaPredicted RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 RSAD2Q8WXG1 361 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 ATOH1Q92858 354 aaPredicted RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 SPATA32Q96LK8 384 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 PAAF1Q9BRP4 392 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 HERC2P3Q9BVR0 1158 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 EMILIN2Q9BXX0 1053 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 GPR62Q9BZJ7 368 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 SFXN1Q9H9B4 322 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 MAN1C1Q9NR34 630 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 MRPL17Q9NRX2 175 aaKnown RBP11.44□□□□□ -0.58
NEDD8-202ENST00000396828 KLK14Q9P0G3 267 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 USP20Q9Y2K6 914 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms