RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CHRNB2P17787 502 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 NEDD9Q14511 834 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 SMC1AQ14683 1233 aaKnown RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 TARBP2Q15633 366 aaKnown RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 CFAP221Q4G0U5 840 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 ZNF572Q7Z3I7 529 aaPredicted RBP16.29■□□□□ 0.2
GPC3-202ENST00000394299 DEPTORQ8TB45 409 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 GLG1Q92896 1179 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 MMP19Q99542 508 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 TMEM8AQ9HCN3 771 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 PDE11AQ9HCR9 933 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 COG5Q9UP83 839 aa16.29■□□□□ 0.2
GPC3-202ENST00000394299 PTPRJQ12913 1337 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 H3BQF6 201 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 ATP8B1O43520 1251 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 BUB1BO60566 1050 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 CASP8Q14790 479 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 GJC2Q5T442 439 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 CRELD2Q6UXH1 353 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 CCNI2Q6ZMN8 369 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 LRRC71Q8N4P6 559 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 TRAPPC12Q8WVT3 735 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 ANKFY1Q9P2R3 1169 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 ZSCAN5CA6NGD5 496 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 ZNF233A6NK53 670 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 FTLP02792 175 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 GJB1P08034 283 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 MMEP08473 750 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 GARTP22102 1010 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 ANXA13P27216 316 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 GYS2P54840 703 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 STRN3Q13033 797 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 CAPSQ13938 189 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 KCTD2Q14681 263 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 METTL7BQ6UX53 244 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 METTL13Q8N6R0 699 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 FBXL13Q8NEE6 735 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 PRPF31Q8WWY3 499 aaKnown RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 L3MBTL3Q96JM7 780 aaPredicted RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 NRBP2Q9NSY0 501 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 TSKSQ9UJT2 592 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 AGO2Q9UKV8 859 aaKnown RBP16.28■□□□□ 0.2
GPC3-202ENST00000394299 COQ4Q9Y3A0 265 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 CENPFP49454 3210 aa16.28■□□□□ 0.2
GPC3-202ENST00000394299 ATMINO43313 823 aaPredicted RBP16.27■□□□□ 0.2
GPC3-202ENST00000394299 ZBTB48P10074 688 aaPredicted RBP16.27■□□□□ 0.2
GPC3-202ENST00000394299 MKRN4PQ13434 485 aaPredicted RBP16.27■□□□□ 0.2
GPC3-202ENST00000394299 MAP1SQ66K74 1059 aaPredicted RBP16.27■□□□□ 0.2
GPC3-202ENST00000394299 SPOPLQ6IQ16 392 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 HDXQ7Z353 690 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 PEX26Q7Z412 305 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 FAM71AQ8IYT1 594 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 TMC2Q8TDI7 906 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 EPS8L1Q8TE68 723 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 GPR20Q99678 358 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 UBXN6Q9BZV1 441 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 TAF1DQ9H5J8 278 aaPredicted RBP16.27■□□□□ 0.2
GPC3-202ENST00000394299 CLEC11AQ9Y240 323 aa16.27■□□□□ 0.2
GPC3-202ENST00000394299 DNAJC25-GNG10A0A024R161 153 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 TARSL2A2RTX5 802 aaKnown RBP16.27■□□□□ 0.19
GPC3-202ENST00000394299 CEP104O60308 925 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 SLC25A27O95847 323 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 TMEM253P0C7T8 217 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 CCDC172P0C7W6 258 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 SRGAP2CP0DJJ0 459 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 TNNI1P19237 187 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 GPC3P51654 580 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 MCCD1P59942 119 aaPredicted RBP16.27■□□□□ 0.19
GPC3-202ENST00000394299 NT5DC3Q86UY8 548 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 CTNNBL1Q8WYA6 563 aaPredicted RBP16.27■□□□□ 0.19
GPC3-202ENST00000394299 MAF1Q9H063 256 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 NOCTQ9UK39 431 aaKnown RBP16.27■□□□□ 0.19
GPC3-202ENST00000394299 STXBP5LQ9Y2K9 1186 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 LOC285556D6RIA3 1793 aa16.27■□□□□ 0.19
GPC3-202ENST00000394299 PMM2O15305 246 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 EXTL3O43909 919 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 ECM2O94769 699 aaPredicted RBP16.26■□□□□ 0.19
GPC3-202ENST00000394299 TGFB3P10600 412 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 OSBPP22059 807 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 OAS2P29728 719 aaKnown RBP16.26■□□□□ 0.19
GPC3-202ENST00000394299 NAMPTP43490 491 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 TNNT3P45378 269 aaPredicted RBP16.26■□□□□ 0.19
GPC3-202ENST00000394299 TRADDQ15628 312 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 ARMC9Q7Z3E5 817 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 SLFN11Q7Z7L1 901 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 ZC3H15Q8WU90 426 aaKnown RBP16.26■□□□□ 0.19
GPC3-202ENST00000394299 PSPC1Q8WXF1 523 aaKnown RBP16.26■□□□□ 0.19
GPC3-202ENST00000394299 SHC3Q92529 594 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 TAF4BQ92750 862 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 SLC10A4Q96EP9 437 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 KRT12Q99456 494 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 AP1M1Q9BXS5 423 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 INTUQ9ULD6 942 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 A0A0G2JMZ2 1700 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 ESYT3A0FGR9 886 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 GLI1P08151 1106 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 RFX1P22670 979 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 MFAP3P55082 362 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 ERVK-9P63128 1117 aa16.26■□□□□ 0.19
GPC3-202ENST00000394299 CELF3Q5SZQ8 465 aaKnown RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms